| Protein: | gi|126321268 |
| Organism: | Monodelphis domestica |
| Length: | 112 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126321268.
| Description | E-value | Query Range |
Subject Range |
|
|
159.0 | [0..1] | [112..1] |
|
|
159.0 | [0..1] | [112..25] |
|
|
159.0 | [0..2] | [112..110] |
|
|
157.0 | [0..1] | [112..1] |
|
|
156.0 | [0..2] | [112..48] |
|
Region A: Residues: [1-112] |
1 11 21 31 41 51
| | | | | |
1 MDGEEKTYGG CEGPDAMYVK LISSDGHEFI VKREHALTSG TIKAMLSGPG QFAENETNEV 60
61 NFREIPSHVL SKVCMYFTYK VRYTNSSTEI PEFPIAPEIA LELLMAANFL DC
|
| Detection Method: |  |
| Confidence: | 39.69897 |
| Match: | 1vcbB |
| Description: | Elongin C |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription elongation regulator activity | 7.53002625989446 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 6.78934422958647 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 6.52079977531395 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 5.78412146341235 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 4.95822114853319 | bayes_pls_golite062009 |
| transcription regulator activity | 4.03732153795237 | bayes_pls_golite062009 |
| DNA binding | 3.50992893425527 | bayes_pls_golite062009 |
| nucleic acid binding | 3.39650042677839 | bayes_pls_golite062009 |
| transcription factor activity | 2.77967244868934 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 2.75167015020269 | bayes_pls_golite062009 |
| binding | 2.73171412378045 | bayes_pls_golite062009 |
| cation channel activity | 2.69496177380647 | bayes_pls_golite062009 |
| transporter activity | 2.69283272202719 | bayes_pls_golite062009 |
| voltage-gated potassium channel activity | 2.6326729238119 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 2.62698068681382 | bayes_pls_golite062009 |
| voltage-gated channel activity | 2.62598337348177 | bayes_pls_golite062009 |
| potassium channel activity | 2.60418200634863 | bayes_pls_golite062009 |
| transmembrane transporter activity | 2.57638436739741 | bayes_pls_golite062009 |
| gated channel activity | 2.55327516550249 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.55217077864016 | bayes_pls_golite062009 |
| ion channel activity | 2.55187860471911 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 2.52366517282235 | bayes_pls_golite062009 |
| substrate-specific channel activity | 2.49612586394403 | bayes_pls_golite062009 |
| channel activity | 2.47974023065334 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 2.47974023065334 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.47370185025265 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 2.46166567746833 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 2.36236066628439 | bayes_pls_golite062009 |
| ligase activity | 1.75579073151181 | bayes_pls_golite062009 |
| transcription repressor activity | 1.71028791830657 | bayes_pls_golite062009 |
| protein binding | 1.38558174459188 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.933012980583336 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.784594789263781 | bayes_pls_golite062009 |
| delayed rectifier potassium channel activity | 0.72427436100801 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.278232864316812 | bayes_pls_golite062009 |
| catalytic activity | 0.112500532859479 | bayes_pls_golite062009 |
| chromatin binding | 0.0908724449159477 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.033499769837058 | bayes_pls_golite062009 |
