| Protein: | YJVE_SCHPO |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 1279 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJVE_SCHPO.
| Description | E-value | Query Range |
Subject Range |
|
|
517.0 | [0..77] | [1277..2] |
|
|
513.0 | [0..77] | [1277..2] |
|
|
512.0 | [0..77] | [1277..2] |
|
|
510.0 | [0..77] | [1277..2] |
|
|
510.0 | [0..77] | [1277..2] |
|
Region A: Residues: [1-145] |
1 11 21 31 41 51
| | | | | |
1 MDSYDFQKLT NDENLQGTES QVPSGSKSAS TNGLLSAASS AAGSSFGLTP SAILQQKHEN 60
61 AQQGKKQNNS KSFSKKPAID VHSEDAFPTL LSKTGPSKPR IVSWVRKTAS NTSVAGSDSV 120
121 SRDKIPFSAS SRASSTKSTL SSVKE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [146-400] |
1 11 21 31 41 51
| | | | | |
1 TDFVTETLIL SPDNQAPRMS FVGKPNSVAE IVRTVMHQTS TRINVSTASK TKNTTFLIQG 60
61 KTSAVKAARR QILKLIGRRE TKTMPCPVFV VGAIIGTNGQ NLKSIMDRTS TRIQIPKRNN 120
121 TANESSDDAK KPEKEENSAA STLDDLEPQY EMTTITIEGD FEGVELAQKD IEAIINERTS 180
181 NTTVRISHIS TELYSLLRGP DGKNIKELEE GRDLKVQIPF AYLDPSAPVN PIVLSGEKSA 240
241 VRECALYLQG QAEEL
|
| Detection Method: | |
| Confidence: | 20.0 |
| Match: | 2annA |
| Description: | No description for 2annA was found. |
|
Region A: Residues: [401-652] |
1 11 21 31 41 51
| | | | | |
1 LRTTIPTMLP IPRRQHRFIN GEKGVGIQDI LRKSGCSVIL PPINGDSDVV SVRGPALNIS 60
61 EGIRLTLERA NSTIVDAVNI TTAYASSKNP FDIASIVARL FLRSRKLIPL EEECAVQYHL 120
121 PKREELQSNS NKTVIIEISG KSQEAVREGR AKLLALVNQF PESKFYKVTI DPLLQRYVIG 180
181 SKGKNLQKLR NEHQVELLVG EYGEEDPDVI VCYIGADDGK SPDQIQKELA DLAESVKSSA 240
241 EASAKIVSEI IQ
|
| Detection Method: | |
| Confidence: | 4.5 |
| Match: | 2annA |
| Description: | No description for 2annA was found. |
|
Region A: Residues: [653-725] |
1 11 21 31 41 51
| | | | | |
1 VPSVYHKHIV GPKGTTLNAI IGKSEENVIV QLGKVSYRPD STDDDVYIRG FSKDVERVVS 60
61 EIKQVVRDAK NHE
|
| Detection Method: | |
| Confidence: | 3.30103 |
| Match: | 1tuaA |
| Description: | Structural genomics, 1.5A crystal structure of a hypothetical protein APE0754 from Aeropyrum pernix |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 4.78650555542715 | bayes_pls_golite062009 |
| RNA binding | 4.53756130039297 | bayes_pls_golite062009 |
| binding | 3.45962790790935 | bayes_pls_golite062009 |
| mRNA binding | 2.96669269799942 | bayes_pls_golite062009 |
| transcription regulator activity | 2.54125642939085 | bayes_pls_golite062009 |
| protein binding | 2.21586499514642 | bayes_pls_golite062009 |
| DNA binding | 2.21410605855315 | bayes_pls_golite062009 |
| transcription repressor activity | 2.05847856402521 | bayes_pls_golite062009 |
| satellite DNA binding | 1.7928748433953 | bayes_pls_golite062009 |
| transcription activator activity | 1.48296178355139 | bayes_pls_golite062009 |
| transcription factor activity | 1.22994056525688 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.722090816226222 | bayes_pls_golite062009 |
| transcription factor binding | 0.274119533759015 | bayes_pls_golite062009 |
| signal transducer activity | 0.158470089017993 | bayes_pls_golite062009 |
| molecular transducer activity | 0.158470089017993 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
| 0.0350881281129536 | bayes_pls_golite062009 | |
| sequence-specific DNA binding | 0.0321875054165348 | bayes_pls_golite062009 |
|
Region A: Residues: [726-1279] |
1 11 21 31 41 51
| | | | | |
1 ILHSHVEEFD FPAQYSKNVI GKNGSNVSSL REDLGVQINV EEGHIRIQGI KKNVEETAAR 60
61 IKSQIEALID DTILRVNIPN DFHRQLIGSN GKYVRRLEEK FSVRVRFPRE DDSSNSTGNE 120
121 LMKPTSPDEV VIRGGKKSVA AAKQELLELY EYEKSIAYTS TIDIPSKAVS RVVGRNGSTV 180
181 ENIRTQFDVK IDIGDVSTEE TTPVSVRGAK ADVENAIKEI SAIAEEVKNL VEKVIKIDRE 240
241 YHRYLIGPNG SKLQNTIKEC GGSTDKTETA RLISFSNGNS EEERNSVVLR GDKEIVEALE 300
301 TRLLEIVEEL KNQVEEKIEV PQRCISSIIG RMGSTRRDIE RKTSTMLNIP NVLDPEETVT 360
361 ITIVGSPENC EKAKEMIQEK VASQYTQMIT VPDTVYESIM KGILMKKLRS DLKVFVDTPE 420
421 IKPVQPTEVV LEDHEDGVFP WKLVTHDYTG SSSSEWAVRG HKENVEKAIA SLEKSIKQVM 480
481 ENCIAYLGIP TNLHRRIIGS GGSIINKIRK IAQVKIDVPR TPGDEIVVVQ GSRAGVVKAK 540
541 DLIFERLQEN QNQE
|
| Detection Method: | |
| Confidence: | 66.221849 |
| Match: | 1e3hA |
| Description: | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| structural constituent of ribosome | 4.9869754621766 | bayes_pls_golite062009 |
| structural molecule activity | 4.395910578613 | bayes_pls_golite062009 |
| deacetylase activity | 2.97103147426401 | bayes_pls_golite062009 |
| transcription regulator activity | 2.31170537288595 | bayes_pls_golite062009 |
| nucleic acid binding | 2.15869371949817 | bayes_pls_golite062009 |
| DNA binding | 1.83419041185531 | bayes_pls_golite062009 |
| transcription termination factor activity | 1.53584399356788 | bayes_pls_golite062009 |
| binding | 1.50032731466041 | bayes_pls_golite062009 |
| RNA binding | 1.40868766468494 | bayes_pls_golite062009 |
| protein binding | 1.24158964059466 | bayes_pls_golite062009 |
| transcription activator activity | 1.00010418622757 | bayes_pls_golite062009 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 0.98826050239529 | bayes_pls_golite062009 |
| catalytic activity | 0.878454819018611 | bayes_pls_golite062009 |
| ribonuclease activity | 0.825588323751637 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.499351238958464 | bayes_pls_golite062009 |
| ATPase activity | 0.368110506118156 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.337324481645901 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 0.33153657862266 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.31569932728929 | bayes_pls_golite062009 |
| mRNA binding | 0.31094301077659 | bayes_pls_golite062009 |
| nuclease activity | 0.29999921376873 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.256048137250105 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.237784820115582 | bayes_pls_golite062009 |
| kinase activity | 0.237670019875888 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.235837031080758 | bayes_pls_golite062009 |
| hydrolase activity | 0.225144534202002 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.21915720954962 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.20391251413344 | bayes_pls_golite062009 |
| ATPase activity, coupled | 0.0992081031610161 | bayes_pls_golite062009 |
| transcription factor binding | 0.0761113004281331 | bayes_pls_golite062009 |
