YRC Public Data Repository - Protein Structure Prediction

Protein:	MTR10
Organism:	Saccharomyces cerevisiae
Length:	972 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MTR10.

Description	E-value	Query Range	Subject Range
MTR10 - Nuclear import receptor, mediates the nuclear localization of proteins involved in mRNA-nucleus expo... MTR10_YEAST - mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR10 PE=...	0.0	[1..972]	[1..972]
XPO1 - exportin 1 (CRM1 homolog, yeast) gi\|109103010, gi... - gi\|109103012\|ref\|XP_001115623.1\| PREDICTED: similar to exportin 1 isoform 3 [Macaca mulatta], gi\|109... gi\|208967809, gi... - gi\|208967809\|dbj\|BAG72550.1\| exportin 1 [synthetic construct], gi\|123980736\|gb\|ABM82197.1\| exportin ...	0.0	[4..958]	[23..1018]
gi\|5690335 - gi\|5690335\|gb\|AAD47043.1\|AF158021_1 CRM1/XPO1 protein [Xenopus laevis]	0.0	[4..958]	[23..1018]
gi\|14250864 - gi\|14250864\|emb\|CAC39223.1\| exportin 1b [Arabidopsis thaliana]	0.0	[5..958]	[14..1026]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[3..958]	[10..1023]
gi\|11493965 - gi\|11493965\|gb\|AAG35722.1\| crm1 protein [Schizosaccharomyces pombe]	0.0	[3..958]	[10..1024]
gi\|5734611 - gi\|5734611\|dbj\|BAA83347.1\| Crm1-K1 [synthetic construct]	0.0	[3..958]	[10..1024]

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Predicted Domain #1

Region A:
Residues: [1-642]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNLQVSDIE TALQCISSTA SQDDKNKALQ FLEQFQRSTV AWSICNEILS KEDPTNALLE  60
   61 LNIFAAQTLR NKVTYDLSQL ENNLPQFKDS LLTLLLSHNQ KLIITQLNVA LARLAIQFLE 120
  121 WQNPIFEIIS LLNSSPSILL NFLRILPEET LDIASTSLTE VEFNSRIHEL IDPIAEDVLK 180
  181 FLVSCIDLLQ NTDGNSSSSI SLEQILRCLN SWSYEFPVEQ LLTVQPLINL VFETISNGNE 240
  241 SDMEAFDSAI DCLCVILRES RDTTNEQLIS ALFHQLMLLQ EKLLPTLFTD HPLNDEYDDD 300
  301 LLEGMTRLFV EAGEAWSVVI SKNPDFFKPM VLVLLMLTCK NEDLDVVSYT FPFWFNFKQS 360
  361 LVLPRYQESR KAYSDIFVKL INGIITHLQY PSGQFSSKEE EDKFKDFRYH MGDVLKDCTA 420
  421 VVGTSEALSQ PLIRIKSAIE NNNSWQIMEA PLFSLRTMAK EISLTENTIL PEIIKIICNL 480
  481 PEQAKIRYAS TLVLGRYTEW TAKHPELLEV QLQYIFNGFQ LHEGSSDMQS IITASSHALM 540
  541 FFCSDCSKLL VGYIDQLINF FLNVQSSIDI ESQFELCQGL SAVINNQPEA KVSVIFQKLV 600
  601 DDNLRQIEAL IPQWKANPTL LAPQIADKID LLYALFEELK PR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [643-972]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YNYPQQGSEP LLPRIEFIWK ALRTLLVDAG AMTDSIIVER VAKLLRRIFE RFHVFCEPIL  60
   61 PSVAEFLIQG YLTTGFGSYL WCSGSLIVIF GDDESFPISP SLKDAVWKFA LSQCETFILN 120
  121 FNKFDKLQLN DYHEAIIDFF SLISDLIMFY PGAFLNSTEL LGPVLNVALE CVNKLDNYDA 180
  181 YICILRCLDD IISWGFKTPP ISTVSIEIVP DEWRKQVINE VVIAHGNQLI LVLFIGLVTT 240
  241 FENTAHSDAI SCIVKCLRIL TEANNNDATI CIDWIYKVVE QLGQVTLNER DNLAKAVVEG 300
  301 LNSKDYRKVR EGIRAFVGWY SRKNINSRFE