| Protein: | ELP2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 788 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ELP2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [60..744] | [865..1491] |
|
|
0.0 | [5..705] | [1045..1683] |
|
Region A: Residues: [1-542] |
1 11 21 31 41 51
| | | | | |
1 MVECITPEAI FIGANKQTQV SDIHKVKKIV AFGAGKTIAL WDPIEPNNKG VYATLKGHEA 60
61 EVTCVRFVPD SDFMVSASED HHVKIWKFTD YSHLQCIQTI QHYSKTIVAL SALPSLISVG 120
121 CADGTISIWR QNIQNDEFGL AHEFTIKKGF FYPLCLSLSK VEEKKYLLAI GGTNVNVFIA 180
181 SFILSDSGIE KCRVVAELEG HEDWVKSLAF RHQETPGDYL LCSGSQDRYI RLWRIRINDL 240
241 IDDSEEDSKK LTLLSNKQYK FQIDDELRVG INFEALIMGH DDWISSLQWH ESRLQLLAAT 300
301 ADTSLMVWEP DETSGIWVCS LRLGEMSSKG ASTATGSSGG FWSCLWFTHE RMDFFLTNGK 360
361 TGSWRMWATK DNIICDQRLG ISGATKDVTD IAWSPSGEYL LATSLDQTTR LFAPWIYDAS 420
421 GRKREIATWH EFSRPQIHGY DMICVETVTD TRFVSGGDEK ILRSFDLPKG VAGMLQKFVG 480
481 IQFEEKSEMP DSATVPVLGL SNKAGEDDAN EDDEEEEGGN KETPDITDPL SLLECPPMED 540
541 QL
|
| Detection Method: |  |
| Confidence: | 6.522879 |
| Match: | 1k32A_ |
| Description: | Tricorn protease; Tricorn protease N-terminal domain; Tricorn protease domain 2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [543-634] |
1 11 21 31 41 51
| | | | | |
1 QRHLLWPEVE KLYGHGFEIT CLDISPDQKL IASACRSNNV QNAVIRIFST ENWLEIKPAL 60
61 PFHSLTITRL KFSKDGKFLL SVCRDRKWAL WE
|
| Detection Method: | |
| Confidence: | 90.927757 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| actin binding | 3.31804728298431 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 3.13054264433898 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 3.1056443224755 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 3.00646122159505 | bayes_pls_golite062009 |
| tubulin binding | 2.76945430061825 | bayes_pls_golite062009 |
| microtubule binding | 2.72684103222924 | bayes_pls_golite062009 |
| dynein binding | 2.54821997913979 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| 2.40807791198019 | bayes_pls_golite062009 | |
| transcription regulator activity | 2.3610959773142 | bayes_pls_golite062009 |
| nucleic acid binding | 2.30918780727915 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 2.17819869145391 | bayes_pls_golite062009 |
| dynactin binding | 1.85146647785657 | bayes_pls_golite062009 |
| snoRNA binding | 1.76991421703041 | bayes_pls_golite062009 |
| DNA binding | 1.71685536470455 | bayes_pls_golite062009 |
| actin filament binding | 1.5197243426595 | bayes_pls_golite062009 |
| RNA binding | 1.50295916950465 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 1.4866444894826 | bayes_pls_golite062009 |
| hydrolase activity | 1.36960741137363 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.21305848427711 | bayes_pls_golite062009 |
| transcription factor activity | 1.08768505897883 | bayes_pls_golite062009 |
| microtubule plus-end binding | 1.01166033978052 | bayes_pls_golite062009 |
| ligase activity | 0.93058496790047 | bayes_pls_golite062009 |
| transporter activity | 0.692270256454453 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.676924760416604 | bayes_pls_golite062009 |
| transcription repressor activity | 0.658573452658359 | bayes_pls_golite062009 |
| transcription factor binding | 0.489473003915035 | bayes_pls_golite062009 |
| dynein intermediate chain binding | 0.443846546939402 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.426429095658617 | bayes_pls_golite062009 |
| kinase activity | 0.387572734234845 | bayes_pls_golite062009 |
| molecular transducer activity | 0.367729389382533 | bayes_pls_golite062009 |
| signal transducer activity | 0.367729389382533 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.30761651528651 | bayes_pls_golite062009 |
| structural molecule activity | 0.254012051644049 | bayes_pls_golite062009 |
| protein kinase activity | 0.229242350006544 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.226335610368636 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.182612389752591 | bayes_pls_golite062009 |
| histone binding | 0.166694897714113 | bayes_pls_golite062009 |
| chromatin binding | 0.151977098745772 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.121183207943714 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.118975415284669 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
|
Region A: Residues: [635-711] |
1 11 21 31 41 51
| | | | | |
1 RNMEDNTFEL RFKNEKPHTR IIWDADWAPL EFGNVFVTAS RDKTVKVWRH QKEPADDYVL 60
61 EASIKHTKAV TAISIHD
|
| Detection Method: | |
| Confidence: | 136.9897 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [712-788] |
1 11 21 31 41 51
| | | | | |
1 SMIREKILIS VGLENGEIYL YSYTLGKFEL ITQLNEDITP ADKITRLRWS HLKRNGKLFL 60
61 GVGSSDLSTR IYSLAYE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.897 | 0.479 | regulation of transcription from RNA polymerase II promoter | b.1.1 | Immunoglobulin |
| View | Download | 0.839 | 0.073 | regulation of transcription from RNA polymerase II promoter | b.1.18 | E set domains |
| View | Download | 0.839 | 0.003 | regulation of transcription from RNA polymerase II promoter | d.58.10 | Acylphosphatase-like |
| View | Download | 0.762 | 0.002 | regulation of transcription from RNA polymerase II promoter | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.794 | N/A | N/A | b.7.2 | Periplasmic chaperone C-domain |
| View | Download | 0.725 | N/A | N/A | b.1.20 | Tp47 lipoprotein, middle and C-terminal domains |
| View | Download | 0.721 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.694 | N/A | N/A | b.1.2 | Fibronectin type III |
| View | Download | 0.638 | N/A | N/A | d.15.2 | CAD & PB1 domains |
| View | Download | 0.630 | N/A | N/A | b.1.3 | PKD domain |
| View | Download | 0.606 | N/A | N/A | d.226.1 | GIY-YIG endonuclease |
| View | Download | 0.534 | N/A | N/A | d.15.5 | Staphylokinase/streptokinase |
| View | Download | 0.521 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.519 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.512 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.512 | N/A | N/A | b.1.2 | Fibronectin type III |
| View | Download | 0.511 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.508 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.502 | N/A | N/A | b.1.3 | PKD domain |
| View | Download | 0.500 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.493 | N/A | N/A | g.3.7 | Scorpion toxin-like |
| View | Download | 0.489 | N/A | N/A | b.1.14 | Invasin/intimin cell-adhesion fragments |
| View | Download | 0.472 | N/A | N/A | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.458 | N/A | N/A | b.44.1 | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |
| View | Download | 0.452 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.434 | N/A | N/A | d.26.1 | FKBP-like |
| View | Download | 0.421 | N/A | N/A | b.43.4 | Riboflavin synthase domain-like |
| View | Download | 0.420 | N/A | N/A | b.1.2 | Fibronectin type III |
| View | Download | 0.416 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.413 | N/A | N/A | b.7.4 | Rab geranylgeranyltransferase alpha-subunit, insert domain |
| View | Download | 0.409 | N/A | N/A | c.55.4 | Translational machinery components |
| View | Download | 0.403 | N/A | N/A | b.1.18 | E set domains |
| View | Download | 0.395 | N/A | N/A | b.1.5 | Transglutaminase, two C-terminal domains |
| View | Download | 0.394 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.385 | N/A | N/A | d.15.9 | Glutamine synthetase, N-terminal domain |
| View | Download | 0.384 | N/A | N/A | d.94.2 | Putative transcriptional regulator TM1602, C-terminal domain |
| View | Download | 0.379 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.378 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.375 | N/A | N/A | d.99.1 | Ribosomal protein L9 C-domain |
| View | Download | 0.364 | N/A | N/A | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.359 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.350 | N/A | N/A | b.1.2 | Fibronectin type III |
| View | Download | 0.340 | N/A | N/A | b.36.1 | PDZ domain-like |
| View | Download | 0.336 | N/A | N/A | d.58.2 | Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |
| View | Download | 0.335 | N/A | N/A | b.1.2 | Fibronectin type III |
| View | Download | 0.326 | N/A | N/A | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.317 | N/A | N/A | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.314 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.311 | N/A | N/A | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.309 | N/A | N/A | d.84.1 | Subtilisin inhibitor |
| View | Download | 0.302 | N/A | N/A | b.55.1 | PH domain-like |
| View | Download | 0.299 | N/A | N/A | b.1.2 | Fibronectin type III |
| View | Download | 0.272 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.262 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.256 | N/A | N/A | g.17.1 | Cystine-knot cytokines |
| View | Download | 0.254 | N/A | N/A | d.73.1 | RuBisCO, small subunit |
| View | Download | 0.247 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.246 | N/A | N/A | d.26.1 | FKBP-like |
| View | Download | 0.245 | N/A | N/A | b.1.18 | E set domains |
| View | Download | 0.241 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.241 | N/A | N/A | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.236 | N/A | N/A | c.47.1 | Thioredoxin-like |
| View | Download | 0.234 | N/A | N/A | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.233 | N/A | N/A | a.138.1 | Multiheme cytochromes |
| View | Download | 0.223 | N/A | N/A | d.235.1 | Hypothetical protein Yhr087W |
| View | Download | 0.217 | N/A | N/A | b.1.18 | E set domains |
| View | Download | 0.208 | N/A | N/A | b.1.7 | Actinoxanthin-like |
| View | Download | 0.208 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.208 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.204 | N/A | N/A | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
