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Protein Overview: Y163_SYNY3

General Information:
Name(s) found: Y163_SYNY3 [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
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  • Uncharacterized WD repeat-containing protein sll0163 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=sll0163 PE=4 SV=1 [Swiss-Prot]
    • Organism: Synechocystis sp. PCC 6803
    Length: 1693 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVMLSCLTQ QQELLQSLAD RVGQPAIQDN LYFCLAGQFT WVEDWYTTAI AGDVLIFDAG  60
   61 EKEQLARVLQ QWEQFTGHVI LITGLTEEPD PQTFLTQLAL GKQQRCGERH FHWIVLVDPT 120
  121 IEEAFRGLQT FLDGKSHWLD LRLGVGDLEQ CTDELWQCVW LEPSPLAPEK RQEMLVNLPH 180
  181 WLAEIVDQKQ NLELEPISLL QAKLSLLQGL ARESRGEMGR KQAQCHYRES LDVWELLGDT 240
  241 EAIIWLSLRL GYLFLLQAYG EKSRGHQLWQ QTRNYAQTAI AALENQQWHF THGETLNLLG 300
  301 EILRGLEDWE QLRQAAENSL IFFYQLSPFA ATDTTPERNQ EKLWTELELQ GLISLAHSYL 360
  361 CEALVEQWKF DEGKEALKRA FETRPKQVEE RDYRPCLANL HYLAGRVQLA NDQIRESLMT 420
  421 LRQAQTLVSF EDNPRLYLAI LVELRECYLQ LEDWLAALAI DQEYQAREYR LGQRAFIGPK 480
  481 PLPCWPEQRI CRHPLAPEKM LGGGAEARSA VQSKTMVSLT WQDLQKVWEQ KPTPVLVLTG 540
  541 EPGVGKTSWL AGEVLQQMSP ERVLLVDFTP HWAEKLWVHL GESFSLPSLG QATTPELVSA 600
  601 LQALPILDLL LVLDGENGSL PWQKSPSLRQ QELAQVLWQW LLTTSPSQGV RLLISVPPTA 660
  661 IADLYEELKG QLGEEHSLPP LQYQTLSPPT LGQAENWLTQ AMAQCRHPWP PSLQSQFLGD 720
  721 LAMEGNGEQQ PWLHPIDLQL LGTVLEQEQV TKSADYQGKK LDEWLTLAVQ TYLAFLPPHL 780
  781 LKKALQLLKS LADGQQALCL KTEYQLLAAL YSAPEPAADN PPEFAQEDIQ QLQLLLTLLL 840
  841 RGRLIIVISQ ATLPYYRLST THLAHALQGK SAVISTPALI NAGRRGSKSN PNLIAPSPGD 900
  901 RQQGNEDLIA ELEAGSSAEE QVVAQKLKAA QLQYQKLVAG INLEKQCQFI LKQFLVYPLE 960
  961 ALLAAVKTGQ DLQKLVTPET PLVQYPSLAP WLSLHSILAR INECNRCHHE GPVTVLRISP1020
 1021 SMENTPPLVL TATTNGIAYL WSFHGELINV LRGHQEAITA LDWSADGQYF ATASADHTVK1080
 1081 LWQRHGEEVA TLRGHEDWVR SVHFSPHHQF LVTSGQDNTA RIWNFAGEQL TLCQGHADWV1140
 1141 RNAEFNCHGQ ILLTASRDGT ARLWDLEGRE IGLCQGHTSW VRNAQFSPDG QWIVTCSADG1200
 1201 TARLWDLSSQ CFAVLKGHQN WVNNALWSPD GQHIITSSSD GTARVWSRHG KCLGTLRGHD1260
 1261 HNIHGARFSL DGQKIVTYST DNTARLWTKE GTLLTILRGH QKEVYDADFS ADGRFVFTVS1320
 1321 ADQTARQWDI SQKDTITLTG HSHWVRNAHF NPKGDRLLTV SRDKTARLWT TEGECVAVLA1380
 1381 DHQGWVREGQ FSPDGQWIVT GSADKTAQLW NVLGKKLTVL RGHQDAVLNV RFSPDSQYIV1440
 1441 TASKDGTARV WNNTGRELAV LRHYEKNIFA AEFSADGQFI VTASDDNTAG IWEIVGREVG1500
 1501 ICRGHEGPVY FAQFSADSRY ILTASVDNTA RIWDFLGRPL LTLAGHQSIV YQARFSPEGN1560
 1561 LIATVSADHT ARLWDRSGKT VAVLYGHQGL VGTVDWSPDG QMLVTASNDG TARLWDLSGR1620
 1621 ELLTLEGHGN WVRSAEFSPD GRWVLTSSAD GTAKLWPVKT LPQLLSQGGQ WLKNYLTHNA1680
 1681 LVSPADRPGA KVT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..141] deduced N/A No confident structure predictions are available.
    2 View Details [142..403] PSI-BLAST 25.045757 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    3 View Details [404..988] PSI-BLAST 51.522879 Structure of the apoptotic protease-activating factor 1 bound to ADP
    4 View Details [989..1146] PSI-BLAST 72.69897 No description for 2ovpB was found.
    5 View Details [1147..1493] PSI-BLAST 3.39794 No description for 2gbcA was found.
    6 View Details [1494..1577] FFAS03 3.79 Crystal Structure Of The C-Terminal WD40 Domain Of Sif2
    7 View Details [1578..1693] PSI-BLAST 84.69897 No description for 2gnqA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • peroxisome targeting sequence binding
    		•  5.59105468633314 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  4.51110304836456 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  4.23248684026139 bayes_pls_golite062009
  • acetyltransferase activity
    		•  3.92366482959 bayes_pls_golite062009
  • acyltransferase activity
    		•  3.39041465099548 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  3.3543191614921 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  3.18180008263301 bayes_pls_golite062009
  • unfolded protein binding
    		•  3.15627917109528 bayes_pls_golite062009
  • peroxisome matrix targeting signal-1 binding
    		•  3.00002055858836 bayes_pls_golite062009
  • RNA binding
    		•  2.76684454218635 bayes_pls_golite062009
  • binding
    		•  2.71974493738804 bayes_pls_golite062009
  • signal sequence binding
    		•  2.68460419248567 bayes_pls_golite062009
  • protein binding
    		•  2.67835748923436 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.36571535004008 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.03244296439384 bayes_pls_golite062009
  • DNA binding
    		•  1.95874073664777 bayes_pls_golite062009
  • soluble NSF attachment protein activity
    		•  1.79506629366017 bayes_pls_golite062009
  • peptide binding
    		•  1.62367735599503 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.41858884169884 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  1.39974507203417 bayes_pls_golite062009
  • heat shock protein binding
    		•  1.35268080101836 bayes_pls_golite062009
  • transcription factor activity
    		•  1.21805666483342 bayes_pls_golite062009
  • receptor activity
    		•  1.19949789380979 bayes_pls_golite062009
  • transferase activity
    		•  1.14940839435601 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.12788325078271 bayes_pls_golite062009
  • signal transducer activity
    		•  1.12788325078271 bayes_pls_golite062009
  • ligase activity
    		•  0.825764637499128 bayes_pls_golite062009
  • chaperone binding
    		•  0.677143111475679 bayes_pls_golite062009
  • hydrolase activity
    		•  0.619711232527193 bayes_pls_golite062009
  • transcription factor binding
    		•  0.518146612491969 bayes_pls_golite062009
  • procollagen-proline 4-dioxygenase activity
    		•  0.482467028485988 bayes_pls_golite062009
  • peptidyl-proline 4-dioxygenase activity
    		•  0.482467028485988 bayes_pls_golite062009
  • peptidyl-proline dioxygenase activity
    		•  0.482467028485988 bayes_pls_golite062009
  • procollagen-proline dioxygenase activity
    		•  0.482467028485988 bayes_pls_golite062009
  • enzyme binding
    		•  0.44905827271946 bayes_pls_golite062009
  • SMAD binding
    		•  0.317832792665752 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.30464889749774 bayes_pls_golite062009
  • enzyme regulator activity
    		•  0.192538429095884 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.116119418380222 bayes_pls_golite062009
  • syntaxin binding
    		•  0.0598606763736398 bayes_pls_golite062009
  • transcription activator activity
    		•  0.0593768116971065 bayes_pls_golite062009
  • small GTPase binding
    		•  0.0394561704024805 bayes_pls_golite062009
  • nucleoside-triphosphatase regulator activity
    		•  0.0274922636265745 bayes_pls_golite062009
  • GTPase binding
    		•  0.0230090675760397 bayes_pls_golite062009
  • GTPase regulator activity
    		•  0.0182110291463968 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle