| Protein: | RAD54 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 898 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD54.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..898] | [1..898] |
|
|
0.0 | [27..846] | [491..1268] |
|
|
0.0 | [27..834] | [489..1255] |
|
|
0.0 | [33..826] | [496..1248] |
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|
0.0 | [33..826] | [496..1248] |
|
|
0.0 | [17..898] | [13..852] |
|
Region A: Residues: [1-223] |
1 11 21 31 41 51
| | | | | |
1 MARRRLPDRP PNGIGAGERP RLVPRPINVQ DSVNRLTKPF RVPYKNTHIP PAAGRIATGS 60
61 DNIVGGRSLR KRSATVCYSG LDINADEAEY NSQDISFSQL TKRRKDALSA QRLAKDPTRL 120
121 SHIQYTLRRS FTVPIKGYVQ RHSLPLTLGM KKKITPEPRP LHDPTDEFAI VLYDPSVDGE 180
181 MIVHDTSMDN KEEESKKMIK STQEKDNINK EKNSQEERPT QRI
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [224-275] |
1 11 21 31 41 51
| | | | | |
1 GRHPALMTNG VRNKPLRELL GDSENSAENK KKFASVPVVI DPKLAKILRP HQ
|
| Detection Method: | |
| Confidence: | 13.09 |
| Match: | 1gm5A |
| Description: | RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription repressor activity | 3.46705970365511 | bayes_pls_golite062009 |
| transcription regulator activity | 3.2394894333307 | bayes_pls_golite062009 |
| binding | 3.06758476214113 | bayes_pls_golite062009 |
| chromatin binding | 2.9265077396229 | bayes_pls_golite062009 |
| histone binding | 2.00388175060339 | bayes_pls_golite062009 |
| nucleic acid binding | 1.7870619298179 | bayes_pls_golite062009 |
| DNA binding | 1.72304410722296 | bayes_pls_golite062009 |
| protein binding | 1.61683263008775 | bayes_pls_golite062009 |
| methylated histone residue binding | 1.03331560428208 | bayes_pls_golite062009 |
| general transcriptional repressor activity | 0.49996033797134 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.356338632175355 | bayes_pls_golite062009 |
| satellite DNA binding | 0.327386416436959 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.309377712814897 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.296839540568239 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.29636000593974 | bayes_pls_golite062009 |
| catalytic activity | 0.14067200158938 | bayes_pls_golite062009 |
|
Region A: Residues: [276-583] |
1 11 21 31 41 51
| | | | | |
1 VEGVRFLYRC VTGLVMKDYL EAEAFNTSSE DPLKSDEKAL TESQKTEQNN RGAYGCIMAD 60
61 EMGLGKTLQC IALMWTLLRQ GPQGKRLIDK CIIVCPSSLV NNWANELIKW LGPNTLTPLA 120
121 VDGKKSSMGG GNTTVSQAIH AWAQAQGRNI VKPVLIISYE TLRRNVDQLK NCNVGLMLAD 180
181 EGHRLKNGDS LTFTALDSIS CPRRVILSGT PIQNDLSEYF ALLSFSNPGL LGSRAEFRKN 240
241 FENPILRGRD ADATDKEITK GEAQLQKLST IVSKFIIRRT NDILAKYLPC KYEHVIFVNL 300
301 KPLQNELY
|
| Detection Method: | |
| Confidence: | 13.09 |
| Match: | 1gm5A |
| Description: | RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| microtubule motor activity | 3.4297361345158 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 3.0989886302218 | bayes_pls_golite062009 |
| pyrophosphatase activity | 3.01886747063507 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 2.99763530427224 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 2.99650240285889 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| motor activity | 2.60481158518321 | bayes_pls_golite062009 |
| nucleic acid binding | 2.11222585187695 | bayes_pls_golite062009 |
| DNA binding | 1.7904783386531 | bayes_pls_golite062009 |
| hydrolase activity | 1.77231681433173 | bayes_pls_golite062009 |
| ATPase activity | 1.76238574289941 | bayes_pls_golite062009 |
| transcription regulator activity | 1.68903321260301 | bayes_pls_golite062009 |
| ATPase activity, coupled | 1.57826779898847 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.50574672650697 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.47858140861683 | bayes_pls_golite062009 |
| microfilament motor activity | 1.28029120876672 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.2155186842031 | bayes_pls_golite062009 |
| helicase activity | 1.16085745407703 | bayes_pls_golite062009 |
| tubulin binding | 1.01673904002272 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| microtubule binding | 0.902404986889887 | bayes_pls_golite062009 |
| actin binding | 0.875514430441177 | bayes_pls_golite062009 |
| structural molecule activity | 0.86514677273731 | bayes_pls_golite062009 |
| plus-end-directed microtubule motor activity | 0.773586048423911 | bayes_pls_golite062009 |
| DNA helicase activity | 0.72881469450553 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.725611289205392 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.720649395550746 | bayes_pls_golite062009 |
| nucleotide binding | 0.717697610309727 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.713814218071151 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.713752628021599 | bayes_pls_golite062009 |
| transcription factor activity | 0.603758349693077 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.59513742813869 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.59513742813869 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.58862275163252 | bayes_pls_golite062009 |
| structural constituent of muscle | 0.559419947521782 | bayes_pls_golite062009 |
| telomeric DNA binding | 0.40354211833657 | bayes_pls_golite062009 |
| transcription repressor activity | 0.244736544804496 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.22150712609541 | bayes_pls_golite062009 |
| ATP binding | 0.19169045543599 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.165732470448462 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.162060759063149 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.144154288308693 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.114463153989353 | bayes_pls_golite062009 |
| GTPase activity | 0.105546189348878 | bayes_pls_golite062009 |
| guanyl nucleotide binding | 0.0289841199143713 | bayes_pls_golite062009 |
| translation regulator activity | 0.0269721463618237 | bayes_pls_golite062009 |
| guanyl ribonucleotide binding | 0.0187537754688351 | bayes_pls_golite062009 |
| GTP binding | 0.0171298013679982 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.0028386101905622 | bayes_pls_golite062009 |
|
Region A: Residues: [584-640] |
1 11 21 31 41 51
| | | | | |
1 NKLIKSREVK KVVKGVGGSQ PLRAIGILKK LCNHPNLLNF EDEFDDEDDL ELPDDYN
|
| Detection Method: | |
| Confidence: | 8.221849 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [641-898] |
1 11 21 31 41 51
| | | | | |
1 MPGSKARDVQ TKYSAKFSIL ERFLHKIKTE SDDKIVLISN YTQTLDLIEK MCRYKHYSAV 60
61 RLDGTMSINK RQKLVDRFND PEGQEFIFLL SSKAGGCGIN LIGANRLILM DPDWNPAADQ 120
121 QALARVWRDG QKKDCFIYRF ISTGTIEEKI FQRQSMKMSL SSCVVDAKED VERLFSSDNL 180
181 RQLFQKNENT ICETHETYHC KRCNAQGKQL KRAPAMLYGD ATTWNHLNHD ALEKTNDHLL 240
241 KNEHHYNDIS FAFQYISH
|
| Detection Method: | |
| Confidence: | 7.045757 |
| Match: | 1d9xA_ |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
|
