| Protein: | RCK1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 512 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RCK1.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [3..506] | [6..457] |
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|
0.0 | [1..512] | [1..512] |
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|
0.0 | [3..506] | [6..461] |
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0.0 | [3..506] | [6..464] |
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0.0 | [3..506] | [6..464] |
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|
0.0 | [49..506] | [1..426] |
|
Region A: Residues: [1-94] |
1 11 21 31 41 51
| | | | | |
1 MSVNPEFIAD GIDFYPTTPD AAYFNAADGK NKVNRINGNS ENLHHSFASG CRRSSLSVDF 60
61 NVTSSDSEKS EQSCLENNSQ EDEYFCDIFS TELK
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.503 | d.42.1 | POZ domain |
| View | Download | 0.608 | a.28.1 | ACP-like |
| View | Download | 0.604 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.648 | d.79.3 | L30e-like |
| View | Download | 0.565 | d.203.1 | DsrC, the gamma subunit of dissimilatory sulfite reductase |
| View | Download | 0.474 | b.6.1 | Cupredoxins |
| View | Download | 0.427 | a.59.1 | PAH2 domain |
| View | Download | 0.399 | d.95.2 | Homing endonucleases |
| View | Download | 0.380 | a.150.1 | Anti-sigma factor AsiA |
| View | Download | 0.373 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.371 | d.79.3 | L30e-like |
| View | Download | 0.360 | c.23.1 | CheY-like |
| View | Download | 0.338 | c.23.1 | CheY-like |
| View | Download | 0.335 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.323 | a.60.13 | Putative methyltransferase TM0872, insert domain |
| View | Download | 0.313 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.311 | d.68.3 | SirA-like |
| View | Download | 0.309 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.283 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.283 | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.281 | c.44.2 | Enzyme IIB-cellobiose |
| View | Download | 0.280 | d.95.2 | Homing endonucleases |
| View | Download | 0.277 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.261 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.255 | c.23.1 | CheY-like |
| View | Download | 0.247 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.245 | d.58.25 | Killer toxin KP6 alpha-subunit |
| View | Download | 0.243 | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
| View | Download | 0.241 | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.238 | d.95.2 | Homing endonucleases |
| View | Download | 0.237 | d.58.5 | GlnB-like |
| View | Download | 0.222 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.221 | a.74.1 | Cyclin-like |
| View | Download | 0.220 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.214 | d.68.3 | SirA-like |
| View | Download | 0.214 | d.58.5 | GlnB-like |
| View | Download | 0.212 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.209 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.208 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.202 | c.3.1 | FAD/NAD(P)-binding domain |
| Term | Confidence | Notes |
| phosphotransferase activity, alcohol group as acceptor | 5.49988294224815 | bayes_pls_golite062009 |
| protein kinase activity | 5.4586557943719 | bayes_pls_golite062009 |
| kinase activity | 5.3287080791198 | bayes_pls_golite062009 |
| cyclic nucleotide-dependent protein kinase activity | 4.97855712164511 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 4.96052051118534 | bayes_pls_golite062009 |
| cAMP-dependent protein kinase activity | 4.66277812893755 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 4.46381887831481 | bayes_pls_golite062009 |
| calmodulin-dependent protein kinase activity | 4.31938467136214 | bayes_pls_golite062009 |
| transferase activity | 3.97138602499442 | bayes_pls_golite062009 |
| protein tyrosine kinase activity | 2.8153155526437 | bayes_pls_golite062009 |
| binding | 2.74863538127007 | bayes_pls_golite062009 |
| transmembrane receptor activity | 2.59526003830791 | bayes_pls_golite062009 |
| transmembrane receptor protein kinase activity | 2.54265774272269 | bayes_pls_golite062009 |
| molecular transducer activity | 2.40586892801446 | bayes_pls_golite062009 |
| signal transducer activity | 2.40586892801446 | bayes_pls_golite062009 |
| receptor activity | 2.39311927684508 | bayes_pls_golite062009 |
| protein binding | 2.276111749106 | bayes_pls_golite062009 |
| tubulin binding | 2.18641675163967 | bayes_pls_golite062009 |
| transmembrane receptor protein tyrosine kinase activity | 2.16831387024372 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.12615078788254 | bayes_pls_golite062009 |
| receptor signaling protein activity | 2.10379226653669 | bayes_pls_golite062009 |
| ATP binding | 1.97600611746091 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 1.93596671856664 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 1.90928021591891 | bayes_pls_golite062009 |
| microtubule binding | 1.88110801192607 | bayes_pls_golite062009 |
| receptor signaling protein serine/threonine kinase activity | 1.81249386965144 | bayes_pls_golite062009 |
| molecular adaptor activity | 1.81145713371725 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 1.65732943334212 | bayes_pls_golite062009 |
| ribonucleotide binding | 1.65726906484847 | bayes_pls_golite062009 |
| purine nucleotide binding | 1.63763394711025 | bayes_pls_golite062009 |
| nucleotide binding | 1.63195828048121 | bayes_pls_golite062009 |
| SH3/SH2 adaptor activity | 1.59474164216385 | bayes_pls_golite062009 |
| telethonin binding | 1.59285057739948 | bayes_pls_golite062009 |
| transcription regulator activity | 1.56748951434625 | bayes_pls_golite062009 |
| nucleic acid binding | 1.46547714006072 | bayes_pls_golite062009 |
| DNA binding | 1.35333135345112 | bayes_pls_golite062009 |
| actin binding | 1.33479685165255 | bayes_pls_golite062009 |
| catalytic activity | 1.21655087018101 | bayes_pls_golite062009 |
| transcription factor activity | 1.10928254946881 | bayes_pls_golite062009 |
| transporter activity | 1.07717671444596 | bayes_pls_golite062009 |
| transcription activator activity | 0.997272622653026 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.93867354225509 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.925299895386908 | bayes_pls_golite062009 |
| growth factor binding | 0.86076618871384 | bayes_pls_golite062009 |
| protein binding, bridging | 0.83823250804321 | bayes_pls_golite062009 |
| alpha-actinin binding | 0.713064190387634 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.612883428421652 | bayes_pls_golite062009 |
| cyclin-dependent protein kinase activity | 0.499492353295369 | bayes_pls_golite062009 |
| protein serine/threonine/tyrosine kinase activity | 0.48345772948903 | bayes_pls_golite062009 |
| enzyme binding | 0.46284745266176 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.419967454336647 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.401250804041384 | bayes_pls_golite062009 |
| magnesium ion binding | 0.393328812780268 | bayes_pls_golite062009 |
| MAP kinase kinase kinase activity | 0.37115026509016 | bayes_pls_golite062009 |
| MAP kinase kinase activity | 0.35402045013148 | bayes_pls_golite062009 |
| phosphotyrosine binding | 0.311079584914389 | bayes_pls_golite062009 |
| kinase binding | 0.26752427107238 | bayes_pls_golite062009 |
| actin filament binding | 0.2403700250846 | bayes_pls_golite062009 |
| protein complex binding | 0.239339759110451 | bayes_pls_golite062009 |
| transforming growth factor beta receptor activity | 0.20643152368029 | bayes_pls_golite062009 |
| transmembrane receptor protein serine/threonine kinase activity | 0.20643152368029 | bayes_pls_golite062009 |
| ErbB-2 class receptor binding | 0.182469382556979 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.176810368721201 | bayes_pls_golite062009 |
| insulin receptor binding | 0.09784832072622 | bayes_pls_golite062009 |
| MAP kinase activity | 0.08504542461349 | bayes_pls_golite062009 |
| protein kinase binding | 0.00674998152095019 | bayes_pls_golite062009 |
|
Region A: Residues: [95-218] |
1 11 21 31 41 51
| | | | | |
1 LDETSNKSTD YSSSNHQYPE QLELHNYKLL NKIGEGAFSR VFKAVGINTD DQAPVAIKAI 60
61 IKKGISSDAI LKGNDRIQGS SRKKVLNEVA IHKLVSKNNP HCTKFIAFQE SANYYYLVTE 120
121 LVTG
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|
Region B: Residues: [442-457] |
1 11 21 31 41 51
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1 RAETLHCALS CQSEKQ
|
| Detection Method: | |
| Confidence: | 623.228787 |
| Match: | 1a06__ |
| Description: | Calmodulin-dependent protein kinase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [219-441] |
1 11 21 31 41 51
| | | | | |
1 GEIFDRIVQL TCFSEDLARH VITQVAIAIK HMHYMGIVHR DVKPENLLFE PIPFYGLDGD 60
61 MQKEDEFTLG VGGGGIGLVK LMDFGLAKKL RNNTAKTPCG TIEYVASEVF TSKRYSMKVD 120
121 MWSIGCVLFT LLCGYPPFYE KNEKTLLKKI SRGDYEFLAP WWDNISSGAK NAVTHLLEVD 180
181 PNKRYDIDDF LNDPWLNSYD CLKDSNSNSY ASVQSILNDS FDE
|
| Detection Method: | |
| Confidence: | 623.228787 |
| Match: | 1a06__ |
| Description: | Calmodulin-dependent protein kinase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [458-512] |
1 11 21 31 41 51
| | | | | |
1 DDTEFSRSES SEYIFMTEED RNLRGSWIGE PKECFTLDLA TSSIYRRRKN KIFFW
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| Detection Method: | |
| Confidence: | 2.154902 |
| Match: | 1lj6A_ |
| Description: | No description for 1lj6A_ was found. |
