| Protein: | CPR4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 318 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CPR4.
| Description | E-value | Query Range |
Subject Range |
|
|
7.0E-81 | [1..318] | [1..318] |
|
|
1.0E-75 | [40..281] | [3..253] |
|
|
9.0E-75 | [40..281] | [3..253] |
|
|
2.0E-73 | [40..281] | [3..253] |
|
|
1.0E-72 | [50..227] | [1..164] |
|
|
7.0E-72 | [50..226] | [1..163] |
|
Region A: Residues: [1-264] |
1 11 21 31 41 51
| | | | | |
1 MWLKSLLLCL YSLVLCQVHA APSSGKQITS KDVDLQKKYE PSPPATHRGI ITIEYFDPVS 60
61 KSMKEADLTF ELYGTVVPKT VNNFAMLAHG VKAVIEGKDP NDIHTYSYRK TKINKVYPNK 120
121 YIQGGVVAPD VGPFTVYGPK FDDENFYLKH DRPERLAMAY FGPDSNTSEF IITTKADGNE 180
181 ELDGKSVVFG QITSGLDQLM DAIQYTETDE YGKPQHELRF LYFVLEILKI SNILDLHAAY 240
241 TEKVEKFRNG DVSVGSTLEN IFRN
|
| Detection Method: |  |
| Confidence: | 268.264245 |
| Match: | 1dywA_ |
| Description: | Cyclophilin (eukaryotic) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein deacetylase activity | 4.3775483906311 | bayes_pls_golite062009 |
| histone deacetylase activity | 4.29026678196473 | bayes_pls_golite062009 |
| peptidyl-prolyl cis-trans isomerase activity | 3.73853378771688 | bayes_pls_golite062009 |
| cis-trans isomerase activity | 3.66963215732405 | bayes_pls_golite062009 |
| deacetylase activity | 3.49940864924766 | bayes_pls_golite062009 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 3.01511519120932 | bayes_pls_golite062009 |
| RNA binding | 2.94609837984526 | bayes_pls_golite062009 |
| signal sequence binding | 2.68460419248567 | bayes_pls_golite062009 |
| isomerase activity | 1.96529188741504 | bayes_pls_golite062009 |
| hydrolase activity | 1.57292398066812 | bayes_pls_golite062009 |
| binding | 1.46018233647024 | bayes_pls_golite062009 |
| mRNA binding | 1.45537055700871 | bayes_pls_golite062009 |
| unfolded protein binding | 1.38124355054041 | bayes_pls_golite062009 |
| transcription regulator activity | 1.26149030245805 | bayes_pls_golite062009 |
| peroxisome targeting sequence binding | 1.01220052237687 | bayes_pls_golite062009 |
| DNA binding | 0.9531600253493 | bayes_pls_golite062009 |
| nucleic acid binding | 0.939772862764466 | bayes_pls_golite062009 |
| catalytic activity | 0.748655649755714 | bayes_pls_golite062009 |
| procollagen-proline dioxygenase activity | 0.482467028485988 | bayes_pls_golite062009 |
| procollagen-proline 4-dioxygenase activity | 0.482467028485988 | bayes_pls_golite062009 |
| peptidyl-proline dioxygenase activity | 0.482467028485988 | bayes_pls_golite062009 |
| peptidyl-proline 4-dioxygenase activity | 0.482467028485988 | bayes_pls_golite062009 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 0.408539130322443 | bayes_pls_golite062009 |
| transcription factor activity | 0.374364600772076 | bayes_pls_golite062009 |
| drug binding | 0.36339132904137 | bayes_pls_golite062009 |
| histone binding | 0.268719695649015 | bayes_pls_golite062009 |
| protein binding | 0.130251391659493 | bayes_pls_golite062009 |
| N-acetyltransferase activity | 0.105969834846946 | bayes_pls_golite062009 |
|
Region A: Residues: [265-318] |
1 11 21 31 41 51
| | | | | |
1 DKAYTPLTTS TGTTAYDLNH PISRALMCLT VLGLCFIAYK GMHEKPHTVS LRHK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
