| Protein: | gi|11559516 |
| Organism: | Plasmodium falciparum |
| Length: | 758 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11559516.
| Description | E-value | Query Range |
Subject Range |
|
|
490.0 | [0..1] | [736..1] |
|
|
480.0 | [0..1] | [736..1] |
|
|
468.0 | [0..31] | [756..155] |
|
|
466.0 | [0..31] | [756..155] |
|
|
465.0 | [0..31] | [756..216] |
|
|
462.0 | [0..31] | [756..156] |
|
Region A: Residues: [1-229] |
1 11 21 31 41 51
| | | | | |
1 MIGIQEGRAF FNPTRNPNNR PENNIRIEEN LPSLNEVYNY FQDFLSRYSS NTLKEGNLKR 60
61 TLFENVKNNN FTLDLKLDDI YKQQTVFENN EISATPRSER KMKKPENYSA ILARALSERP 120
121 LTYLPTIERV CYEVCETANI LNDEDEHLNY IQINLLNTFI RPTPIRGLLA ATQERFVVVP 180
181 GIIVQASKPQ HKMRKITLQC RYCDHKMSID VPLWRDKPQL PPYCRYSST
|
| Detection Method: |  |
| Confidence: | 37.39794 |
| Match: | 1ltlA |
| Description: | DNA replication initiator (cdc21/cdc54) N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [230-629] |
1 11 21 31 41 51
| | | | | |
1 MKSSMGLGNA MDSQLGCNGV LEPYVILPNE CTFVDIQSLK MQELPEAVPT GDMPRHLQLN 60
61 VTRYLCEKMI PGDRVYVHGV LTSYNPNPRP TRADGTNFSY LHVLGFQKYD DMSGNDLNFD 120
121 VEERNELTLL AAEHNIHEKI FKSIAPELYG MDEVKKACAC LLFGGTRKRI GEETKIRGDI 180
181 NMLMLGDPSV AKSQILKFVN RCAPVSVYTS GKGSSAAGLT AAVMRDSQGV FSLEGGAMVL 240
241 ADGGVVCIDE FDKMRDDDVV AIHEAMEQQT ISISKAGITT MLNTRCSVIA AANPSFGSYD 300
301 DSQDTTYQHD FKTTILSRFD IIFLLRNKQD VEKDTLLCNH IVALHASKHK SQEGEIPLSK 360
361 LTRYIQYAKR EIAPLLSKEA RDSLRNFYVQ TRAEYRGDRR
|
| Detection Method: | |
| Confidence: | 33.0 |
| Match: | 1qvrA |
| Description: | Crystal Structure Analysis of ClpB |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA clamp loader activity | 4.91429252297969 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 4.80695929076807 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.66107861968804 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| nucleic acid binding | 2.51683451033161 | bayes_pls_golite062009 |
| DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.13284212711072 | bayes_pls_golite062009 |
| DNA binding | 2.12258000781149 | bayes_pls_golite062009 |
| transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
| telomeric DNA binding | 2.0142766759353 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| microtubule motor activity | 1.6537049553461 | bayes_pls_golite062009 |
| DNA replication origin binding | 1.62491387774159 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.47858140861683 | bayes_pls_golite062009 |
| protein binding | 1.22129154759482 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| motor activity | 1.14667913749579 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 1.05990253628867 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 1.05990253628867 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.971476020912368 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.928091843881235 | bayes_pls_golite062009 |
| transcription activator activity | 0.889929694023098 | bayes_pls_golite062009 |
| transcription factor activity | 0.887108427603557 | bayes_pls_golite062009 |
| structural molecule activity | 0.86514677273731 | bayes_pls_golite062009 |
| transcription repressor activity | 0.862685397469217 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.782430219754236 | bayes_pls_golite062009 |
| single-stranded telomeric DNA binding | 0.700780808446722 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.6071273686445 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.569910969126728 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.568840867400671 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.568779924702229 | bayes_pls_golite062009 |
| nucleotide binding | 0.564275755355315 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.543891899378373 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.500462538667228 | bayes_pls_golite062009 |
| translation regulator activity | 0.29096092258568 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.274994961137851 | bayes_pls_golite062009 |
| four-way junction helicase activity | 0.26252931460003 | bayes_pls_golite062009 |
| ATP binding | 0.1860481660648 | bayes_pls_golite062009 |
| exodeoxyribonuclease V activity | 0.185603938981231 | bayes_pls_golite062009 |
| RNA helicase activity | 0.18426050934025 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.152859582615242 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 0.14606996093053 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.138615225841109 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 0.13050483816765 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
| 3'-5' DNA helicase activity | 0.0769112340058804 | bayes_pls_golite062009 |
| actin binding | 0.00482938540552702 | bayes_pls_golite062009 |
|
Region A: Residues: [630-758] |
1 11 21 31 41 51
| | | | | |
1 SVTKKIPITL RQLESLIRLA ESFAKMELSQ FATDKHVQMS IDLFSASTAE TAKQCLIFET 60
61 MSPLEQKAVK QAEDAILGRL GKGQRASRVN LFRELQLRGF DRSALSKALA ILIKKGELQE 120
121 RGDRSVRRT
|
| Detection Method: | |
| Confidence: | 48.69897 |
| Match: | 1ojlA |
| Description: | Crystal structure of a sigma54-activator suggests the mechanism for the conformational switch necessary for sigma54 binding |
Matching Structure (courtesy of the PDB): |
|
