YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16329650, gi\|...
Organism:	Synechocystis sp. PCC 6803
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16329650, gi|....

Description	E-value	Query Range	Subject Range
gi\|2231720 - gi\|2231720\|gb\|AAC45693.1\| macrophage infectivity potentiator [Legionella jordanis]	179.0	[0..12]	[201..49]
gi\|2231710 - gi\|2231710\|gb\|AAC45688.1\| macrophage infectivity potentiator [Legionella fairfieldensis]	178.0	[0..12]	[201..39]
gi\|2231716 - gi\|2231716\|gb\|AAC45691.1\| macrophage infectivity potentiator [Legionella hackeliae]	178.0	[0..12]	[201..47]
gi\|2231732 - gi\|2231732\|gb\|AAC45699.1\| macrophage infectivity potentiator [Legionella nautarum]	177.0	[0..12]	[201..39]
gi\|2231756 - gi\|2231756\|gb\|AAC45711.1\| macrophage infectivity potentiator [Legionella wadsworthii]	177.0	[0..11]	[201..31]
gi\|2231724 - gi\|2231724\|gb\|AAC45695.1\| macrophage infectivity potentiator [Legionella lansingensis]	177.0	[0..12]	[201..47]
gi\|2231706 - gi\|2231706\|gb\|AAC45686.1\| macrophage infectivity potentiator [Legionella brunensis]	176.0	[0..12]	[201..47]
gi\|2231752 - gi\|2231752\|gb\|AAC45709.1\| macrophage infectivity potentiator [Legionella steigerwaltii]	175.0	[0..11]	[201..31]
gi\|2231736 - gi\|2231736\|gb\|AAC45701.1\| macrophage infectivity potentiator [Legionella parisiensis]	175.0	[0..11]	[201..31]
gi\|2231692 - gi\|2231692\|gb\|AAC45674.1\| macrophage infectivity potentiator [Fluoribacter dumoffii]	175.0	[0..11]	[201..31]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGRTHGIIR PTLLRPIFLM KFFTAMRDIL ISLTVVTFFS LVLISVAIFG KSSPSAIAAP  60
   61 QEVKPVQIAQ ASALQTPEPS PMTAENSANI VTTESGLQYI DEVVGEGPSP TKGQKVEVHY 120
  121 TGRLTDGTKF DSSVDRNKPF TFTIGVGQVI KGWDEGVATM QVGGKRKLII PPDLAYGSRG 180
  181 AGGVIPPNAT LEFEVELLGI K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.30103
Match:	1fd9A
Description:	Macrophage infectivity potentiator protein (MIP)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ryanodine-sensitive calcium-release channel activity	10.9968443145942	bayes_pls_golite062009
intracellular ligand-gated calcium channel activity	10.9968443145942	bayes_pls_golite062009
macrolide binding	7.31599503004442	bayes_pls_golite062009
FK506 binding	7.22442625476031	bayes_pls_golite062009
metal ion transmembrane transporter activity	6.74926751944787	bayes_pls_golite062009
calcium channel activity	6.4374377859142	bayes_pls_golite062009
cation channel activity	6.06732269872248	bayes_pls_golite062009
ion channel activity	5.45007096522107	bayes_pls_golite062009
channel activity	5.32426176964634	bayes_pls_golite062009
passive transmembrane transporter activity	5.32426176964634	bayes_pls_golite062009
substrate-specific channel activity	5.28960420749143	bayes_pls_golite062009
gated channel activity	5.28074654906904	bayes_pls_golite062009
peptidyl-prolyl cis-trans isomerase activity	4.0615867467963	bayes_pls_golite062009
cis-trans isomerase activity	3.99265212272703	bayes_pls_golite062009
ligand-gated channel activity	3.34717828007833	bayes_pls_golite062009
ligand-gated ion channel activity	3.34717828007833	bayes_pls_golite062009
ion transmembrane transporter activity	2.6566793500337	bayes_pls_golite062009
cation transmembrane transporter activity	2.61794461605199	bayes_pls_golite062009
calcium-release channel activity	2.58969194870156	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	2.47257819150887	bayes_pls_golite062009
isomerase activity	2.31710030777753	bayes_pls_golite062009
receptor activity	1.78361575899771	bayes_pls_golite062009
transmembrane receptor activity	1.7459556028988	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	1.68688812199737	bayes_pls_golite062009
kinase activity	1.67904764195462	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.57898291235576	bayes_pls_golite062009
molecular transducer activity	1.53711974553033	bayes_pls_golite062009
signal transducer activity	1.53711974553033	bayes_pls_golite062009
drug binding	1.39643621593407	bayes_pls_golite062009
transferase activity	1.34122735969662	bayes_pls_golite062009
receptor serine/threonine kinase binding	1.32709321745178	bayes_pls_golite062009
transmembrane receptor protein serine/threonine kinase binding	1.32470025150272	bayes_pls_golite062009
transforming growth factor beta receptor binding	1.32470025150272	bayes_pls_golite062009
transcription regulator activity	1.25761243705848	bayes_pls_golite062009
transporter activity	1.25197125648774	bayes_pls_golite062009
binding	1.20237346037815	bayes_pls_golite062009
protein kinase activity	1.16651014558716	bayes_pls_golite062009
protein binding	1.08765413491791	bayes_pls_golite062009
SMAD binding	1.04905381164355	bayes_pls_golite062009
transmembrane transporter activity	1.03909235910355	bayes_pls_golite062009
catalytic activity	0.885282592863018	bayes_pls_golite062009
substrate-specific transporter activity	0.789390402522536	bayes_pls_golite062009
transmembrane receptor protein kinase activity	0.780499202755666	bayes_pls_golite062009
transmembrane receptor protein serine/threonine kinase activity	0.763739321802433	bayes_pls_golite062009
transforming growth factor beta receptor activity	0.763739321802433	bayes_pls_golite062009
intracellular ligand-gated ion channel activity	0.727019445105701	bayes_pls_golite062009
protein serine/threonine kinase activity	0.671059013500415	bayes_pls_golite062009
activin binding	0.33489895389042	bayes_pls_golite062009
unfolded protein binding	0.27473817613726	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: