YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997794, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997794, gi|....

Description	E-value	Query Range	Subject Range
gi\|110601082, gi... - gi\|222053384\|ref\|YP_002535746.1\| extracellular solute-binding protein [Geobacter sp. FRC-32], gi\|221...	227.0	[0..1]	[269..1]
gi\|78193514, gi\|... - gi\|78222259\|ref\|YP_384006.1\| extracellular solute-binding protein [Geobacter metallireducens GS-15],...	224.0	[0..1]	[269..1]
gi\|28806491, gi\|... - gi\|28898274\|ref\|NP_797879.1\| hypothetical protein VP1501 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28806491 - gi\|28806491\|dbj\|BAC59763.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	214.0	[0..1]	[269..1]
gi\|69277136, gi\|... - gi\|69277136\|ref\|ZP_00612608.1\| extracellular solute-binding protein, family 1 [Mesorhizobium sp. BNC...	213.0	[0..7]	[269..6]
gi\|75855499, gi\|... - gi\|75855499\|ref\|ZP_00763148.1\| COG2998: ABC-type tungstate transport system, permease component [Vib...	212.0	[0..1]	[269..1]
gi\|86146011, gi\|... - gi\|86146011\|ref\|ZP_01064338.1\| hypothetical protein MED222_14655 [Vibrio sp. MED222], gi\|85836216\|gb...	210.0	[0..1]	[269..1]
gi\|93353692, gi\|... - gi\|94309840\|ref\|YP_583050.1\| putative signal peptide protein [Ralstonia metallidurans CH34], gi\|9335...	210.0	[0..5]	[269..19]
gi\|116220487, gi... - gi\|75819775\|ref\|ZP_00749841.1\| COG2998: ABC-type tungstate transport system, permease component [Vib...	210.0	[0..1]	[268..1]
gi\|116216946, gi... - gi\|75823742\|ref\|ZP_00753225.1\| COG2998: ABC-type tungstate transport system, permease component [Vib...	209.0	[0..1]	[268..1]
gi\|91223735, gi\|... - gi\|91223735\|ref\|ZP_01258999.1\| hypothetical protein V12G01_18362 [Vibrio alginolyticus 12G01], gi\|91...	209.0	[0..1]	[269..1]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMYRSFAAT LVALLMLVTV AGAEERLKMS TTTSTQDSGL LKVLLPPFEK KNNVKVDVIA  60
   61 VGTGQALKLG EAGDVDVVFV HARKLEDKFV ADGFGVNRKD VMYNDFVIVG PKNDPAGIAK 120
  121 AKTAAEALKL LATKGATFIS RGDKSGTHTK ELDLWKSAGV DPKGNWYVEA GQGMGPVITM 180
  181 ATERRAYTLT DRGTYNAFKG AKTDLVILFQ GEKGLFNPYG IMAVNPKKFP HVKYDLAMKL 240
  241 IDYVTGPEGL KIISDYKAHG EPVFFIYKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.221849
Match:	1twyA
Description:	Crystal structure of hypothetical ABC-type phosphate transporter
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
inorganic anion transmembrane transporter activity	7.26077080183261	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	7.2124404939786	bayes_pls_golite062009
anion transmembrane transporter activity	6.90939835001184	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	6.16669527016856	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	6.16669527016856	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	5.10369591387353	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	5.10318083615538	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	5.10318083615538	bayes_pls_golite062009
active transmembrane transporter activity	5.08926597039825	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	5.08835444171664	bayes_pls_golite062009
primary active transmembrane transporter activity	5.0778580713249	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.79525465597321	bayes_pls_golite062009
ATPase activity, coupled	4.39934929410381	bayes_pls_golite062009
transporter activity	4.36277471796561	bayes_pls_golite062009
ion transmembrane transporter activity	4.08406031512351	bayes_pls_golite062009
transmembrane transporter activity	4.05122336499684	bayes_pls_golite062009
ATPase activity	4.04125376161476	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	3.59134852570229	bayes_pls_golite062009
substrate-specific transporter activity	3.47889550245964	bayes_pls_golite062009
molybdate ion binding	2.97654346456841	bayes_pls_golite062009
peptide transporter activity	2.75577307623285	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.72822921066555	bayes_pls_golite062009
hydrolase activity	2.41680852416007	bayes_pls_golite062009
sulfate transmembrane transporter activity	2.37866673466688	bayes_pls_golite062009
cation transmembrane transporter activity	2.20802092172977	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.18690004317378	bayes_pls_golite062009
oligopeptide transporter activity	1.91036692266394	bayes_pls_golite062009
phosphate transmembrane transporter activity	1.80430433160913	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.70643051049474	bayes_pls_golite062009
pyrophosphatase activity	1.65646853917778	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.65080292688297	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.63520066802961	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.6341518946909	bayes_pls_golite062009
binding	1.54172013140566	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	1.47933194981844	bayes_pls_golite062009
amine transmembrane transporter activity	0.75087224820423	bayes_pls_golite062009
polyamine transmembrane transporter activity	0.74959887541426	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.447307866074763	bayes_pls_golite062009
organic acid transmembrane transporter activity	0.27904792438438	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	0.23979057207055	bayes_pls_golite062009
molybdenum ion binding	0.235639470355611	bayes_pls_golite062009
amine binding	0.23472639987051	bayes_pls_golite062009
phosphate transmembrane-transporting ATPase activity	0.107885716445079	bayes_pls_golite062009
polyamine-transporting ATPase activity	0.0497853931936705	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: