YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995905, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995905, gi|....

Description	E-value	Query Range	Subject Range
gi\|29342814, gi\|... - gi\|29375354\|ref\|NP_814508.1\| amino acid ABC transporter, amino acid-binding/permease protein [Entero... gi\|227554876, gi... - gi\|227554876\|ref\|ZP_03984923.1\| amino acid ABC superfamily ATP binding cassette transporter protein ...	168.0	[0..58]	[261..517]
gi\|62464008 - gi\|62464008\|ref\|ZP_00383312.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	161.0	[0..58]	[260..493]
gi\|125624721, gi... - gi\|125624721\|ref\|YP_001033204.1\| glutamine ABC transporter permease and substrate binding protein [L... gi\|62421458 - gi\|62421458\|gb\|AAX82492.1\| GlnP [Lactococcus lactis subsp. cremoris]	160.0	[0..58]	[260..503]
gi\|254879962 - gi\|254879962\|ref\|ZP_05252672.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|254852338 - gi\|254852338\|ref\|ZP_05241686.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|254993068 - gi\|254993068\|ref\|ZP_05275258.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|47092054, gi\|... - gi\|47092054\|ref\|ZP_00229847.1\| glutamine ABC transporter, permease/substrate-binding protein [Lister... gi\|133735858, gi... - gi\|254931228\|ref\|ZP_05264587.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|153166167, gi... - gi\|153166167\|ref\|ZP_01926786.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|254823885 - gi\|254823885\|ref\|ZP_05228886.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|226223465, gi... - gi\|226223465\|ref\|YP_002757572.1\| Glutamine ABC transporter (binding and transport protein) [Listeria...	159.0	[0..58]	[261..273]
gi\|46880345, gi\|... - gi\|46907078\|ref\|YP_013467.1\| glutamine ABC transporter, permease/substrate-binding protein [Listeria... gi\|224503184 - gi\|224503184\|ref\|ZP_03671491.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|255520210 - gi\|255520210\|ref\|ZP_05387447.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|127632725, gi... - gi\|254832188\|ref\|ZP_05236843.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste...	159.0	[0..58]	[261..273]
gi\|254935857 - gi\|254935857\|ref\|ZP_05267554.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|254898981, gi... - gi\|254898981\|ref\|ZP_05258905.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|47016735, gi\|... - gi\|47094853\|ref\|ZP_00232467.1\| glutamine ABC transporter, permease/substrate-binding protein [Lister... gi\|127766174, gi... - gi\|254911531\|ref\|ZP_05261543.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste...	159.0	[0..58]	[261..273]
gi\|14211227 - gi\|14211227\|gb\|AAK57382.1\|AF372619_1 GlnP [Streptococcus agalactiae] gi\|14211227 - gi\|14211227\|gb\|AAK57382.1\| GlnP [Streptococcus agalactiae]	159.0	[0..61]	[260..519]
gi\|16802888 - gi\|16802888\|ref\|NP_464373.1\| hypothetical protein lmo0847 [Listeria monocytogenes EGD-e] gi\|25516643, gi\|... - pir\|\|AG1180 Glutamine ABC transporter (binding and transport protein) homolog lmo0847 [imported] - L...	159.0	[0..58]	[261..273]
gi\|16799914 - gi\|16799914\|ref\|NP_470182.1\| hypothetical protein lin0840 [Listeria innocua Clip11262] gi\|25517319, gi\|... - pir\|\|AH1537 Glutamine ABC transporter (binding and transport protein) homolog lin0840 [imported] - L...	159.0	[0..58]	[261..273]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIAKLHFAA KEMDEALAAA REVLSLYPDN SEAKNFTASV EREKKPGYVT FLQDCLKFLP  60
   61 VLLKGAVMTL LLVLCTMFIS PIGGLLIALG RISTFRPLSA LCWFVIWLFR GTPLLLQLFF 120
  121 IYYGLPSLGI TLKPITAAVI GLGLNYSAYL GEIIRGAIQS IDHGQTEAAK ALGMTYGQTM 180
  181 RRVVIPQTYK RLMPPIGNEF IALIKDTALV STIAMVELMR AADQMFNTYF NVTALVLAAV 240
  241 IYLIFTTFFT FLFEKIEHRA GIYERR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.154902
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
active transmembrane transporter activity	3.89128503869358	bayes_pls_golite062009
primary active transmembrane transporter activity	3.78071702105421	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	3.78024819585319	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.76710689838502	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	3.76710689838502	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	3.76480875126102	bayes_pls_golite062009
substrate-specific transporter activity	3.65928254714629	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.61840729006809	bayes_pls_golite062009
ATPase activity, coupled	3.13976951511862	bayes_pls_golite062009
ATPase activity	2.90304684848114	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.85886572725081	bayes_pls_golite062009
pyrophosphatase activity	2.78799656158331	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.76854894183109	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.76635806953632	bayes_pls_golite062009
ion transmembrane transporter activity	2.42886654788147	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	1.77292242910033	bayes_pls_golite062009
organic acid transmembrane transporter activity	1.77066316989042	bayes_pls_golite062009
cation transmembrane transporter activity	1.54974155411368	bayes_pls_golite062009
hydrolase activity	1.52360037846731	bayes_pls_golite062009
amine transmembrane transporter activity	1.35745015743741	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
amino acid transmembrane transporter activity	0.702245581829122	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.69074662322395	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
catalytic activity	0.427775057748038	bayes_pls_golite062009
anion transmembrane transporter activity	0.18066368771781	bayes_pls_golite062009
sugar transmembrane transporter activity	0.149318428666465	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.0202682073710961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: