| Protein: | COPB_YEAST |
| Organism: | Saccharomyces cerevisiae S288c |
| Length: | 973 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COPB_YEAST.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..973] | [1..973] |
|
|
0.0 | [3..966] | [2..952] |
|
|
0.0 | [3..966] | [2..952] |
|
|
0.0 | [3..966] | [2..952] |
|
|
0.0 | [4..966] | [7..971] |
|
|
0.0 | [2..966] | [84..1036] |
|
|
0.0 | [5..969] | [3..964] |
|
Region A: Residues: [1-106] |
1 11 21 31 41 51
| | | | | |
1 MTSLSSQPAY TLVFDPSPSM ETYSSTDFQK ALEKGSDEQK IDTMKSILVT MLEGNPMPEL 60
61 LMHIIRFVMP SKNKELKKLL YFYWEIVPKL AEDGKLRHEM ILVCNA
|
| Detection Method: |  |
| Confidence: | 266.0 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein transporter activity | 4.58709163830613 | bayes_pls_golite062009 |
| clathrin binding | 3.32763559990416 | bayes_pls_golite062009 |
| binding | 2.48958374349477 | bayes_pls_golite062009 |
| transporter activity | 2.48700774379895 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.26725422172281 | bayes_pls_golite062009 |
| protein binding | 1.75981610748679 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 1.4515576307774 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.28481004323799 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 1.09652988954158 | bayes_pls_golite062009 |
| nuclear localization sequence binding | 0.661470469730249 | bayes_pls_golite062009 |
| signal sequence binding | 0.57106697498903 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.252495966234234 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.248585912061178 | bayes_pls_golite062009 |
| primary active transmembrane transporter activity | 0.226380819487924 | bayes_pls_golite062009 |
| P-P-bond-hydrolysis-driven transmembrane transporter activity | 0.217517113570989 | bayes_pls_golite062009 |
| nuclear export signal receptor activity | 0.20777471813851 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 0.178770060806735 | bayes_pls_golite062009 |
| ATPase activity, coupled to movement of substances | 0.175241020572885 | bayes_pls_golite062009 |
| ATPase activity, coupled to transmembrane movement of substances | 0.174922130116569 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.100181463251306 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.0635404099346928 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0548082069333885 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.052195223119721 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.0405268469927988 | bayes_pls_golite062009 |
|
Region A: Residues: [107-211] |
1 11 21 31 41 51
| | | | | |
1 IQHDLQHPNE YIRGNTLRFL TKLREAELLE QMVPSVLACL EYRHAYVRKY AILAVFSIFK 60
61 VSEHLLPDAK EIINSFIVAE TDPICKRNAF IGLAELDREN ALHYL
|
| Detection Method: | |
| Confidence: | 266.0 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [212-336] |
1 11 21 31 41 51
| | | | | |
1 ENNIADIENL DPLLQAVFVQ FIRQDANRTP ALKAQYIELL MELLSTTTSD EVIFETALAL 60
61 TVLSANPNVL VPAVNKLIDL AVKVSDNNIK LIVLDRIQDI NANNVGALEE LTLDILRVLN 120
121 AEDLD
|
| Detection Method: | |
| Confidence: | 266.0 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [337-436] |
1 11 21 31 41 51
| | | | | |
1 VRSKALDISM DLATSRNAED VVQLLKKELQ TTVNNPDQDK AMQYRQLLIK TIRTVAVNFV 60
61 EMAASVVSLL LDFIGDLNSV AASGIIAFIK EVIEKYPQLR
|
| Detection Method: | |
| Confidence: | 266.0 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [437-519] |
1 11 21 31 41 51
| | | | | |
1 ANILENMVQT LDKVRSAKAY RGALWIMGEY AEGESEIQHC WKHIRNSVGE VPILQSEIKK 60
61 LTQNQEHTEE NEVDATAKPT GPV
|
| Detection Method: | |
| Confidence: | 266.0 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [520-615] |
1 11 21 31 41 51
| | | | | |
1 ILPDGTYATE SAFDVKTSQK SVTDEERDSR PPIRRFVLSG DFYTAAILAN TIIKLVLKFE 60
61 NVSKNKTVIN ALKAEALLIL VSIVRVGQSS LVEKKI
|
| Detection Method: | |
| Confidence: | 29.154902 |
| Match: | 1jpwA_ |
| Description: | beta-Catenin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [616-789] |
1 11 21 31 41 51
| | | | | |
1 DEDSLERVMT SISILLDEVN PEEKKEEVKL LEVAFLDTTK SSFKRQIEIA KKNKHKRALK 60
61 DSCKNIEPID TPISFRQFAG VDSTNVQKDS IEEDLQLAMK GDAIHATSSS SISKLKKIVP 120
121 LCGFSDPVYA EACITNNQFD VVLDVLLVNQ TKETLKNLHV QFATLGDLKI IDTP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.644 | c.36.1 | Thiamin diphosphate-binding fold (THDP-binding) |
| View | Download | 0.590 | a.47.2 | t-snare proteins |
| View | Download | 0.610 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.554 | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.564 | a.47.2 | t-snare proteins |
| View | Download | 0.553 | a.63.1 | Apolipophorin-III |
| View | Download | 0.552 | a.47.2 | t-snare proteins |
| View | Download | 0.514 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.514 | a.47.1 | STAT |
| View | Download | 0.503 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.497 | c.36.1 | Thiamin diphosphate-binding fold (THDP-binding) |
| View | Download | 0.462 | b.60.1 | Lipocalins |
| View | Download | 0.433 | a.47.2 | t-snare proteins |
| View | Download | 0.432 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.426 | a.47.2 | t-snare proteins |
| View | Download | 0.423 | a.47.2 | t-snare proteins |
| View | Download | 0.415 | a.47.2 | t-snare proteins |
| View | Download | 0.411 | a.25.1 | Ferritin-like |
| View | Download | 0.386 | a.25.1 | Ferritin-like |
| View | Download | 0.376 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.358 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.355 | a.47.2 | t-snare proteins |
| View | Download | 0.355 | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
| View | Download | 0.351 | a.47.2 | t-snare proteins |
| View | Download | 0.350 | a.47.2 | t-snare proteins |
| View | Download | 0.344 | a.47.2 | t-snare proteins |
| View | Download | 0.326 | a.47.2 | t-snare proteins |
| View | Download | 0.320 | a.47.2 | t-snare proteins |
| View | Download | 0.307 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.303 | a.47.2 | t-snare proteins |
| View | Download | 0.292 | a.47.2 | t-snare proteins |
| View | Download | 0.289 | a.47.2 | t-snare proteins |
| View | Download | 0.285 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.283 | c.33.1 | Cysteine hydrolase |
| View | Download | 0.280 | a.47.2 | t-snare proteins |
| View | Download | 0.277 | a.136.1 | Repressor of bacterial conjugation FinO |
| View | Download | 0.275 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.270 | d.24.1 | Pili subunits |
| View | Download | 0.269 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.265 | d.91.1 | N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 |
| View | Download | 0.264 | a.7.4 | Smac/diablo |
| View | Download | 0.262 | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.254 | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.253 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.230 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.227 | a.87.1 | DBL homology domain (DH-domain) |
| View | Download | 0.205 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.205 | f.14.1 | Voltage-gated potassium channels |
|
Region A: Residues: [790-973] |
1 11 21 31 41 51
| | | | | |
1 QKTNVIPHGF HKFTVTVKVS SADTGVIFGN IIYDGAHGED ARYVILNDVH VDIMDYIKPA 60
61 TADDEHFRTM WNAFEWENKI SVKSQLPTLH AYLRELVKGT NMGILTPSES LGEDDCRFLS 120
121 CNLYAKSSFG EDALANLCIE KDSKTNDVIG YVRIRSKGQG LALSLGDRVA LIAKKTNKLA 180
181 LTHV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
