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Protein Overview: COPB_YEAST

General Information:
Name(s) found: COPB_YEAST [Swiss-Prot]
Description(s) found:
  • Coatomer subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC26 PE=1 SV=2 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 973 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLSSQPAY TLVFDPSPSM ETYSSTDFQK ALEKGSDEQK IDTMKSILVT MLEGNPMPEL  60
   61 LMHIIRFVMP SKNKELKKLL YFYWEIVPKL AEDGKLRHEM ILVCNAIQHD LQHPNEYIRG 120
  121 NTLRFLTKLR EAELLEQMVP SVLACLEYRH AYVRKYAILA VFSIFKVSEH LLPDAKEIIN 180
  181 SFIVAETDPI CKRNAFIGLA ELDRENALHY LENNIADIEN LDPLLQAVFV QFIRQDANRT 240
  241 PALKAQYIEL LMELLSTTTS DEVIFETALA LTVLSANPNV LVPAVNKLID LAVKVSDNNI 300
  301 KLIVLDRIQD INANNVGALE ELTLDILRVL NAEDLDVRSK ALDISMDLAT SRNAEDVVQL 360
  361 LKKELQTTVN NPDQDKAMQY RQLLIKTIRT VAVNFVEMAA SVVSLLLDFI GDLNSVAASG 420
  421 IIAFIKEVIE KYPQLRANIL ENMVQTLDKV RSAKAYRGAL WIMGEYAEGE SEIQHCWKHI 480
  481 RNSVGEVPIL QSEIKKLTQN QEHTEENEVD ATAKPTGPVI LPDGTYATES AFDVKTSQKS 540
  541 VTDEERDSRP PIRRFVLSGD FYTAAILANT IIKLVLKFEN VSKNKTVINA LKAEALLILV 600
  601 SIVRVGQSSL VEKKIDEDSL ERVMTSISIL LDEVNPEEKK EEVKLLEVAF LDTTKSSFKR 660
  661 QIEIAKKNKH KRALKDSCKN IEPIDTPISF RQFAGVDSTN VQKDSIEEDL QLAMKGDAIH 720
  721 ATSSSSISKL KKIVPLCGFS DPVYAEACIT NNQFDVVLDV LLVNQTKETL KNLHVQFATL 780
  781 GDLKIIDTPQ KTNVIPHGFH KFTVTVKVSS ADTGVIFGNI IYDGAHGEDA RYVILNDVHV 840
  841 DIMDYIKPAT ADDEHFRTMW NAFEWENKIS VKSQLPTLHA YLRELVKGTN MGILTPSESL 900
  901 GEDDCRFLSC NLYAKSSFGE DALANLCIEK DSKTNDVIGY VRIRSKGQGL ALSLGDRVAL 960
  961 IAKKTNKLAL THV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] PSI-BLAST 266.0 Adaptin beta subunit N-terminal fragment
    2 View Details [107..211] PSI-BLAST 266.0 Adaptin beta subunit N-terminal fragment
    3 View Details [212..336] PSI-BLAST 266.0 Adaptin beta subunit N-terminal fragment
    4 View Details [337..436] PSI-BLAST 266.0 Adaptin beta subunit N-terminal fragment
    5 View Details [437..519] PSI-BLAST 266.0 Adaptin beta subunit N-terminal fragment
    6 View Details [520..615] PSI-BLAST 29.154902 beta-Catenin
    7 View Details [616..789] deduced N/A No confident structure predictions are available.
    8 View Details [790..973] MSA 1.01295 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein transporter activity
    		•  4.58709163830613 bayes_pls_golite062009
  • clathrin binding
    		•  3.32763559990416 bayes_pls_golite062009
  • binding
    		•  2.48958374349477 bayes_pls_golite062009
  • transporter activity
    		•  2.48700774379895 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.26725422172281 bayes_pls_golite062009
  • protein binding
    		•  1.75981610748679 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  1.4515576307774 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.28481004323799 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.09652988954158 bayes_pls_golite062009
  • nuclear localization sequence binding
    		•  0.661470469730249 bayes_pls_golite062009
  • signal sequence binding
    		•  0.57106697498903 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.252495966234234 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.248585912061178 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.226380819487924 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.217517113570989 bayes_pls_golite062009
  • nuclear export signal receptor activity
    		•  0.20777471813851 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  0.178770060806735 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  0.175241020572885 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  0.174922130116569 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.100181463251306 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.0635404099346928 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0548082069333885 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.052195223119721 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.0405268469927988 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7 No functions predicted.
    8 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle