YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213616288
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-2068
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213616288.

Description	E-value	Query Range	Subject Range
gi\|75235779, gi\|... - gi\|75235779\|ref\|ZP_00719934.1\| COG0725: ABC-type molybdate transport system, periplasmic component [...	2.0E-42	[1..257]	[1..257]
gi\|204929989, gi... - gi\|204929989\|ref\|ZP_03221010.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Sa... gi\|205271821, gi... - gi\|205352040\|ref\|YP_002225841.1\| molybdate transporter periplasmic protein [Salmonella enterica subs... gi\|197939631, gi... - gi\|198245115\|ref\|YP_002214746.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [S... gi\|16764145, gi\|... - gi\|16764145\|ref\|NP_459760.1\| molybdate transporter periplasmic protein [Salmonella typhimurium LT2],... gi\|199602339, gi... - gi\|200389894\|ref\|ZP_03216505.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Sa... gi\|194735602, gi... - gi\|194735602\|ref\|YP_002113874.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [S... gi\|197239948, gi... - gi\|197261693\|ref\|ZP_03161767.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Sa... gi\|168466365, gi... - gi\|195630974\|gb\|EDX49560.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Salmon... gi\|194403050, gi... - gi\|194444387\|ref\|YP_002040017.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [S... gi\|197290157, gi... - gi\|197290157\|gb\|EDY29514.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Salmon... gi\|168263725, gi... - gi\|205347685\|gb\|EDZ34316.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Salmon... gi\|161364349, gi... - gi\|161614985\|ref\|YP_001588950.1\| molybdate transporter periplasmic protein [Salmonella enterica subs... gi\|62126982, gi\|... - gi\|62179349\|ref\|YP_215766.1\| molybdate transporter periplasmic protein [Salmonella enterica subsp. e... gi\|206708022, gi... - gi\|207856219\|ref\|YP_002242870.1\| molybdate transporter periplasmic protein [Salmonella enterica subs...	2.0E-42	[1..257]	[1..257]
gi\|238861794, gi... - gi\|238900021\|ref\|YP_002925817.1\| molybdate transporter subunit [Escherichia coli BW2952], gi\|2388617... gi\|253972727, gi... - gi\|254160826\|ref\|YP_003043934.1\| molybdate transporter subunit [Escherichia coli B str. REL606], gi\|... gi\|124498301, gi... - gi\|124531880\|ref\|ZP_01701979.1\| molybdenum ABC transporter, periplasmic molybdate-binding protein [E... gi\|169755827, gi... - gi\|170020899\|ref\|YP_001725853.1\| molybdate transporter periplasmic protein [Escherichia coli ATCC 87... EG12427 - molybdate ABC transporter periplasmic binding protein; chlorate resistance protein / Molybdate ABC t... MODA_ECOLI - Molybdate-binding periplasmic protein precursor - Escherichia coli gi\|1651348, gi\|8... - gi\|89107614\|ref\|AP_001394.1\| molybdate transporter subunit [Escherichia coli str. K-12 substr. W3110... gi\|169888257, gi... - gi\|170080422\|ref\|YP_001729742.1\| molybdate ABC transporter periplasmic substrate-binding protein [Es... gi\|83584853, gi\|... - gi\|83584853\|ref\|ZP_00923512.1\| COG0725: ABC-type molybdate transport system, periplasmic component [... gi\|157160238, gi... - gi\|75194915\|ref\|ZP_00704985.1\| COG0725: ABC-type molybdate transport system, periplasmic component [... gi\|75511364, gi\|... - gi\|75511364\|ref\|ZP_00734049.1\| COG0725: ABC-type molybdate transport system, periplasmic component [... EG12427 - molybdate ABC transporter periplasmic binding protein; chlorate resistance protein / Molybdate ABC t...	5.0E-42	[1..257]	[1..257]
gi\|56128373, gi\|... - gi\|56414116\|ref\|YP_151191.1\| molybdate transporter periplasmic protein [Salmonella enterica subsp. e... gi\|197094515, gi... - gi\|197363038\|ref\|YP_002142675.1\| molybdate transporter periplasmic protein [Salmonella enterica subs...	5.0E-42	[1..257]	[1..257]
gi\|117622946, gi... - gi\|117622946\|ref\|YP_851859.1\| molybdate transporter periplasmic protein [Escherichia coli APEC O1], ... gi\|218364438, gi... - gi\|218557669\|ref\|YP_002390582.1\| molybdate transporter periplasmic protein [Escherichia coli S88], g... gi\|191174199, gi... - gi\|75237098\|ref\|ZP_00721152.1\| COG0725: ABC-type molybdate transport system, periplasmic component [... gi\|170683313, gi... - gi\|170683313\|ref\|YP_001742866.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [E... gi\|26107129, gi\|... - gi\|26246730\|ref\|NP_752770.1\| molybdate transporter periplasmic protein [Escherichia coli CFT073], gi... gi\|218688548, gi... - gi\|218688548\|ref\|YP_002396760.1\| molybdate transporter periplasmic protein [Escherichia coli ED1a], ... gi\|110640965, gi... - gi\|110640965\|ref\|YP_668693.1\| molybdate transporter periplasmic protein [Escherichia coli 536], gi\|1... gi\|227839028, gi... - gi\|227884276\|ref\|ZP_04002081.1\| molybdenum (Mo2+) ABC superfamily ATP binding cassette transporter, ... gi\|91209792, gi\|... - gi\|91209792\|ref\|YP_539778.1\| molybdate transporter periplasmic protein [Escherichia coli UTI89], gi\|... gi\|237707280, gi... - gi\|237707280\|ref\|ZP_04537761.1\| molybdate-binding periplasmic protein [Escherichia sp. 3_2_53FAA], g...	6.0E-42	[1..257]	[1..257]
gi\|208808745, gi... - gi\|208808745\|ref\|ZP_03251082.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Es... gi\|208815045, gi... - gi\|208815045\|ref\|ZP_03256224.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Es... gi\|208737758, gi... - gi\|208822273\|ref\|ZP_03262592.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Es... gi\|209399552, gi... - gi\|209399552\|ref\|YP_002269391.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [E... gi\|168779252, gi... - gi\|189003052\|gb\|EDU72038.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Escher... gi\|168786923, gi... - gi\|189373173\|gb\|EDU91589.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Escher... gi\|24111968, gi\|... - gi\|24111968\|ref\|NP_706478.1\| molybdate transporter periplasmic protein [Shigella flexneri 2a str. 30... gi\|168800804, gi... - gi\|189376982\|gb\|EDU95398.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Escher... gi\|209776244, gi... - pir\|\|H85578 molybdate-binding periplasmic protein, permease [imported] - Escherichia coli (strain O1... gi\|195936752 - gi\|195936752\|ref\|ZP_03082134.1\| molybdate transporter periplasmic protein [Escherichia coli O157:H7 ... gi\|15830045, gi\|... - gi\|15830045\|ref\|NP_308818.1\| molybdate-binding periplasmic permease protein [Escherichia coli O157:H... gi\|110804618, gi... - gi\|110804618\|ref\|YP_688138.1\| molybdate transporter periplasmic protein [Shigella flexneri 5 str. 84... gi\|168757053, gi... - gi\|189355871\|gb\|EDU74290.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Escher... gi\|30062081, gi\|... - gi\|30062081\|ref\|NP_836252.1\| molybdate transporter periplasmic protein [Shigella flexneri 2a str. 24... gi\|168763354, gi... - gi\|189366438\|gb\|EDU84854.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Escher... gi\|168767209, gi... - gi\|189363392\|gb\|EDU81811.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Escher... gi\|15800472, gi\|... - gi\|15800472\|ref\|NP_286484.1\| molybdate transporter periplasmic protein [Escherichia coli O157:H7 EDL... gi\|168776491, gi... - gi\|187768124\|gb\|EDU31968.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Escher... gi\|15830045, gi\|... - gi\|15830045\|ref\|NP_308818.1\| molybdate transporter periplasmic protein [Escherichia coli O157:H7 str... gi\|168750256, gi... - gi\|188015535\|gb\|EDU53657.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Escher... gi\|254591314, gi... - gi\|254791914\|ref\|YP_003076751.1\| molybdate transporter subunit; periplasmic-binding component of ABC... gi\|217322179, gi... - gi\|217325958\|ref\|ZP_03442042.1\| molybdate ABC transporter, periplasmic molybdate-binding protein [Es... gi\|218553283, gi... - gi\|218553283\|ref\|YP_002386196.1\| molybdate transporter periplasmic protein [Escherichia coli IAI1], ... gi\|218704084, gi... - gi\|218704084\|ref\|YP_002411603.1\| molybdate transporter periplasmic protein [Escherichia coli UMN026]...	7.0E-42	[1..257]	[1..257]
gi\|72397200, gi\|... - gi\|73670038\|ref\|YP_306053.1\| molybdenum ABC transporter, solute-binding protein [Methanosarcina bark...	7.0E-42	[1..257]	[1..275]
gi\|20090101, gi\|... - gi\|20090101\|ref\|NP_616176.1\| molybdate ABC transporter, solute-binding protein [Methanosarcina aceti...	8.0E-42	[19..257]	[38..274]
gi\|18145749, gi\|... - gi\|18311067\|ref\|NP_563001.1\| molybdenum ABC transporter [Clostridium perfringens str. 13], gi\|181457...	1.0E-41	[1..256]	[1..255]

Back

Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHSWLRLVA GATLSFVIAG HALADEGKIT VFAAASLTNA MQDIAAEYKK EKNVDVVSSF  60
   61 ASSSTLARQI EAGAPADLFI SADQKWMDYA ADKKAVDTTT RETLLGNSLV VVAPKASEQK 120
  121 PFTIDNKTDW IHLLNGGRLA VGDPQHVPAG IYAKEALQKL GAWQTLEPKL APGEDVRGAL 180
  181 ALVERNEAPL GIVYGSDAVA SKGVNVVATF PEDSHKKVEY PIAIVEGHKN AAVSAFYDYL 240
  241 KGPQASAIFK RYGFTTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.154902
Match:	1amfA
Description:	CRYSTAL STRUCTURE OF MODA, A MOLYBDATE TRANSPORT PROTEIN, COMPLEXED WITH MOLYBDATE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
molybdate ion transmembrane transporter activity	8.48026806882195	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	8.48026806882195	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	7.48200101527962	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	7.26077080183261	bayes_pls_golite062009
anion transmembrane transporter activity	6.90939835001184	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	5.10369591387353	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	5.10318083615538	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	5.10318083615538	bayes_pls_golite062009
active transmembrane transporter activity	5.08926597039825	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	5.08835444171664	bayes_pls_golite062009
primary active transmembrane transporter activity	5.0778580713249	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.79525465597321	bayes_pls_golite062009
molybdate ion binding	4.55503490638084	bayes_pls_golite062009
ATPase activity, coupled	4.39934929410381	bayes_pls_golite062009
transporter activity	4.36277471796561	bayes_pls_golite062009
ion transmembrane transporter activity	4.08406031512351	bayes_pls_golite062009
transmembrane transporter activity	4.05122336499684	bayes_pls_golite062009
ATPase activity	4.04125376161476	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	3.75811558044644	bayes_pls_golite062009
substrate-specific transporter activity	3.47889550245964	bayes_pls_golite062009
peptide transporter activity	2.75577307623285	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.72822921066555	bayes_pls_golite062009
sulfate transmembrane transporter activity	2.55046013011056	bayes_pls_golite062009
hydrolase activity	2.41680852416007	bayes_pls_golite062009
cation transmembrane transporter activity	2.20802092172977	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.18690004317378	bayes_pls_golite062009
phosphate transmembrane transporter activity	1.98762819035198	bayes_pls_golite062009
oligopeptide transporter activity	1.91036692266394	bayes_pls_golite062009
molybdenum ion binding	1.85494643451729	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.70643051049474	bayes_pls_golite062009
pyrophosphatase activity	1.65646853917778	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.65080292688297	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.63520066802961	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.6341518946909	bayes_pls_golite062009
binding	1.54172013140566	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	1.47933194981844	bayes_pls_golite062009
amine transmembrane transporter activity	0.75087224820423	bayes_pls_golite062009
polyamine transmembrane transporter activity	0.74959887541426	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.447307866074763	bayes_pls_golite062009
phosphate transmembrane-transporting ATPase activity	0.283765564520529	bayes_pls_golite062009
organic acid transmembrane transporter activity	0.27904792438438	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	0.23979057207055	bayes_pls_golite062009
amine binding	0.23472639987051	bayes_pls_golite062009
polyamine-transporting ATPase activity	0.0497853931936705	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: