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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.716166338232]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
CYM1
  • mitochondrial intermembrane space
  • mitochondrion
    		•
  • proteolysis
    		•
  • metalloendopeptidase activity
    		•
    PRD1
  • mitochondrial intermembrane space
  • cytoplasm
  • mitochondrion
    		•
  • proteolysis
    		•
  • metalloendopeptidase activity
  • saccharolysin activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    mitochondrial intermembrane space 3.1832E-5 2 36 2 6292
    organelle envelope lumen 3.9411E-5 2 40 2 6292
    mitochondrial envelope 2.4514E-3 2 312 2 6292
    mitochondrial part 5.6881E-3 2 475 2 6292
    organelle envelope 6.43E-3 2 505 2 6292
    envelope 6.43E-3 2 505 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    proteolysis 8.8816E-4 2 188 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    metalloendopeptidase activity 2.779E-6 2 11 2 6292
    metallopeptidase activity 6.0632E-6 2 16 2 6292
    endopeptidase activity 7.2304E-5 2 54 2 6292
    peptidase activity, acting on L-amino acid peptides 2.256E-4 2 95 2 6292
    saccharolysin activity 3.1786E-4 2 1 1 6292
    peptidase activity 9.2646E-4 2 192 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle