| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.744173466515] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| SWC4 |
|
|
|
| VPS72 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| Swr1 complex | 5.3053E-6 | 2 | 15 | 2 | 6292 |
| nuclear chromatin | 1.3278E-4 | 2 | 73 | 2 | 6292 |
| chromatin | 1.4784E-4 | 2 | 77 | 2 | 6292 |
| chromatin remodeling complex | 2.4511E-4 | 2 | 99 | 2 | 6292 |
| nuclear chromosome part | 9.0721E-4 | 2 | 190 | 2 | 6292 |
| nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
| chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
| chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
| NuA4 histone acetyltransferase complex | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| H4/H2A histone acetyltransferase complex | 4.4455E-3 | 2 | 14 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| histone exchange | 2.2737E-6 | 2 | 10 | 2 | 6292 |
| ATP-dependent chromatin remodeling | 1.6421E-5 | 2 | 26 | 2 | 6292 |
| nucleosome organization | 2.0514E-5 | 2 | 29 | 2 | 6292 |
| chromatin remodeling | 1.151E-4 | 2 | 68 | 2 | 6292 |
| chromatin modification | 7.0879E-4 | 2 | 168 | 2 | 6292 |
| chromatin organization | 1.036E-3 | 2 | 203 | 2 | 6292 |
| cellular macromolecular complex subunit organization | 1.6882E-3 | 2 | 259 | 2 | 6292 |
| macromolecular complex subunit organization | 3.2108E-3 | 2 | 357 | 2 | 6292 |
| chromosome organization | 7.7677E-3 | 2 | 555 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| histone binding | 4.4455E-3 | 2 | 14 | 1 | 6292 |