| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.87202632314] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| GTR2 |
|
|
|
| MEH1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| late endosome membrane | 5.0527E-7 | 2 | 5 | 2 | 6292 |
| late endosome | 1.1672E-5 | 2 | 22 | 2 | 6292 |
| endosomal part | 1.2783E-5 | 2 | 23 | 2 | 6292 |
| endosome membrane | 1.2783E-5 | 2 | 23 | 2 | 6292 |
| endosome | 2.2085E-4 | 2 | 94 | 2 | 6292 |
| vacuolar membrane | 3.1973E-4 | 2 | 113 | 2 | 6292 |
| vacuolar part | 3.6682E-4 | 2 | 121 | 2 | 6292 |
| vacuole | 1.0983E-3 | 2 | 209 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| microautophagy | 7.579E-7 | 2 | 6 | 2 | 6292 |
| autophagy | 4.3504E-5 | 2 | 42 | 2 | 6292 |
| membrane invagination | 2.2085E-4 | 2 | 94 | 2 | 6292 |
| membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
| cellular membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
| homeostatic process | 4.1951E-3 | 2 | 408 | 2 | 6292 |
| cellular catabolic process | 4.3405E-3 | 2 | 415 | 2 | 6292 |
| catabolic process | 6.2027E-3 | 2 | 496 | 2 | 6292 |
| vacuolar acidification | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| pH reduction | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| intracellular pH reduction | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| regulation of biological quality | 7.6561E-3 | 2 | 551 | 2 | 6292 |
| regulation of cellular pH | 7.9314E-3 | 2 | 25 | 1 | 6292 |
| regulation of intracellular pH | 7.9314E-3 | 2 | 25 | 1 | 6292 |
| regulation of pH | 9.1975E-3 | 2 | 29 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |