| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 1.03734629494] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| MCM complex | 1.0611E-6 | 2 | 7 | 2 | 6292 |
| pre-replicative complex | 6.0632E-6 | 2 | 16 | 2 | 6292 |
| protein-DNA complex | 8.0641E-5 | 2 | 57 | 2 | 6292 |
| nuclear chromosome part | 9.0721E-4 | 2 | 190 | 2 | 6292 |
| nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
| chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
| nucleoplasm part | 1.5102E-3 | 2 | 245 | 2 | 6292 |
| nucleoplasm | 1.7541E-3 | 2 | 264 | 2 | 6292 |
| chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| DNA unwinding involved in replication | 4.5979E-6 | 2 | 14 | 2 | 6292 |
| DNA geometric change | 9.6001E-6 | 2 | 20 | 2 | 6292 |
| DNA duplex unwinding | 9.6001E-6 | 2 | 20 | 2 | 6292 |
| DNA replication initiation | 2.6678E-5 | 2 | 33 | 2 | 6292 |
| DNA conformation change | 8.3521E-5 | 2 | 58 | 2 | 6292 |
| DNA-dependent DNA replication | 1.678E-4 | 2 | 82 | 2 | 6292 |
| DNA replication | 3.791E-4 | 2 | 123 | 2 | 6292 |
| pre-replicative complex assembly | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ATP-dependent DNA helicase activity | 7.7306E-6 | 2 | 18 | 2 | 6292 |
| chromatin binding | 2.6678E-5 | 2 | 33 | 2 | 6292 |
| DNA helicase activity | 2.8346E-5 | 2 | 34 | 2 | 6292 |
| ATP-dependent helicase activity | 5.6994E-5 | 2 | 48 | 2 | 6292 |
| purine NTP-dependent helicase activity | 5.6994E-5 | 2 | 48 | 2 | 6292 |
| DNA-dependent ATPase activity | 7.5032E-5 | 2 | 55 | 2 | 6292 |
| helicase activity | 1.7194E-4 | 2 | 83 | 2 | 6292 |
| ATPase activity, coupled | 5.5711E-4 | 2 | 149 | 2 | 6292 |
| ATPase activity | 1.1194E-3 | 2 | 211 | 2 | 6292 |
| nucleoside-triphosphatase activity | 2.7262E-3 | 2 | 329 | 2 | 6292 |
| hydrolase activity, acting on acid anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
| pyrophosphatase activity | 3.1391E-3 | 2 | 353 | 2 | 6292 |
| ATP binding | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| adenyl ribonucleotide binding | 7.9314E-3 | 2 | 25 | 1 | 6292 |
| adenyl nucleotide binding | 9.5139E-3 | 2 | 30 | 1 | 6292 |
| purine nucleoside binding | 9.8303E-3 | 2 | 31 | 1 | 6292 |