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View Protein Complex Details

Complex Overview

From Publication: Ho Y. et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature. 2002 Jan 10;415(6868):180-3.
Notes: This molecular complex record represents a population of complexes co-purified by immunoprecipitation of FLAG-tagged Rfa1. The topolgies of protein complexes in this experiment are unknown.
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA replication factor A complex 9.5344E-4 2 3 1 6292
nuclear replisome 5.7138E-3 2 18 1 6292
replisome 5.7138E-3 2 18 1 6292
nuclear replication fork 6.3477E-3 2 20 1 6292
nucleoid 8.248E-3 2 26 1 6292
mitochondrial nucleoid 8.248E-3 2 26 1 6292
chromosome, telomeric region 8.5646E-3 2 27 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

citrate metabolic process 1.2712E-3 2 4 1 6292
DNA replication, synthesis of RNA primer 1.5888E-3 2 5 1 6292
propionate metabolic process 1.5888E-3 2 5 1 6292
glutamate biosynthetic process 4.1283E-3 2 13 1 6292
DNA unwinding involved in replication 4.4455E-3 2 14 1 6292
tricarboxylic acid cycle 4.7627E-3 2 15 1 6292
acetyl-CoA catabolic process 4.7627E-3 2 15 1 6292
telomere maintenance via recombination 5.0798E-3 2 16 1 6292
postreplication repair 5.7138E-3 2 18 1 6292
glutamate metabolic process 5.7138E-3 2 18 1 6292
acetyl-CoA metabolic process 6.3477E-3 2 20 1 6292
DNA geometric change 6.3477E-3 2 20 1 6292
DNA duplex unwinding 6.3477E-3 2 20 1 6292
coenzyme catabolic process 6.3477E-3 2 20 1 6292
cofactor catabolic process 6.9813E-3 2 22 1 6292
double-strand break repair via homologous recombination 6.9813E-3 2 22 1 6292
recombinational repair 8.248E-3 2 26 1 6292
glutamine family amino acid biosynthetic process 8.8811E-3 2 28 1 6292
DNA strand elongation 9.8303E-3 2 31 1 6292
DNA strand elongation involved in DNA replication 9.8303E-3 2 31 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

aconitate hydratase activity 6.3568E-4 2 2 1 6292
damaged DNA binding 3.4937E-3 2 11 1 6292
single-stranded DNA binding 5.0798E-3 2 16 1 6292
hydro-lyase activity 8.5646E-3 2 27 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle