| From Publication: | Krogan N. J. et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature. 2006 Mar 30;440(7084):637-43. Epub 2006 Mar 22. |
| Notes: | From the published set of core protein complex predictions. |
| Complex Size: | 4 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| GARP complex | 3.8553E-10 | 4 | 4 | 3 | 6292 |
| Golgi apparatus part | 1.2171E-7 | 4 | 119 | 4 | 6292 |
| Golgi apparatus | 5.2711E-7 | 4 | 171 | 4 | 6292 |
| cytoplasmic vesicle part | 8.7717E-7 | 4 | 39 | 3 | 6292 |
| cytoplasmic vesicle | 1.8896E-5 | 4 | 107 | 3 | 6292 |
| membrane-bounded vesicle | 1.8896E-5 | 4 | 107 | 3 | 6292 |
| cytoplasmic membrane-bounded vesicle | 1.8896E-5 | 4 | 107 | 3 | 6292 |
| vesicle | 2.0538E-5 | 4 | 110 | 3 | 6292 |
| protein complex | 1.0617E-3 | 4 | 1137 | 4 | 6292 |
| internal side of plasma membrane | 3.1756E-3 | 4 | 5 | 1 | 6292 |
| extrinsic to internal side of plasma membrane | 3.1756E-3 | 4 | 5 | 1 | 6292 |
| TORC1 complex | 3.8098E-3 | 4 | 6 | 1 | 6292 |
| macromolecular complex | 4.5471E-3 | 4 | 1635 | 4 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| retrograde transport, endosome to Golgi | 9.3228E-8 | 4 | 19 | 3 | 6292 |
| Golgi to vacuole transport | 1.9461E-7 | 4 | 24 | 3 | 6292 |
| endosome transport | 2.1179E-6 | 4 | 52 | 3 | 6292 |
| post-Golgi vesicle-mediated transport | 4.7935E-6 | 4 | 68 | 3 | 6292 |
| vacuolar transport | 2.3482E-5 | 4 | 115 | 3 | 6292 |
| Golgi vesicle transport | 7.3351E-5 | 4 | 168 | 3 | 6292 |
| vesicle-mediated transport | 6.0073E-4 | 4 | 340 | 3 | 6292 |
| intracellular transport | 2.525E-3 | 4 | 553 | 3 | 6292 |
| establishment of localization in cell | 3.1914E-3 | 4 | 599 | 3 | 6292 |
| cellular localization | 3.9267E-3 | 4 | 643 | 3 | 6292 |
| mitochondria-nucleus signaling pathway | 4.4437E-3 | 4 | 7 | 1 | 6292 |
| fungal-type cell wall organization | 6.9763E-3 | 4 | 11 | 1 | 6292 |
| regulation of cell growth | 7.6087E-3 | 4 | 12 | 1 | 6292 |
| regulation of growth | 8.8726E-3 | 4 | 14 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| 1-phosphatidylinositol-3-kinase activity | 2.5411E-3 | 4 | 4 | 1 | 6292 |
| phosphoinositide 3-kinase activity | 3.1756E-3 | 4 | 5 | 1 | 6292 |
| protein binding | 3.3984E-3 | 4 | 612 | 3 | 6292 |
| lipid kinase activity | 6.3436E-3 | 4 | 10 | 1 | 6292 |
| inositol or phosphatidylinositol kinase activity | 6.9763E-3 | 4 | 11 | 1 | 6292 |