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Protein Overview: VPS54

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run MLP2 #14 Mitotic Prep2-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data VPS54 and COP1 Huh WK, et al. (2003)
View Data VPS54 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..41]
[98..245]
ORFEUS 7.08 Botulinum neurotoxin
2 View Details [42..97] ORFEUS 7.08 Botulinum neurotoxin
3 View Details [246..417] ORFEUS 8.47 alpha-actinin
4 View Details [418..556] ORFEUS 8.47 alpha-actinin
5 View Details [557..693] ORFEUS 8.47 alpha-actinin
6 View Details [694..889] MSA 1.008939 View MSA. Confident ab initio structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • binding
  • 2.3468119246528 bayes_pls_golite062009
  • cytoskeletal protein binding
  • 2.28760768499625 bayes_pls_golite062009
  • actin binding
  • 2.06460396235438 bayes_pls_golite062009
  • protein binding
  • 1.84956862293123 bayes_pls_golite062009
  • syntaxin binding
  • 1.83513067528946 bayes_pls_golite062009
  • SNARE binding
  • 1.71642476140333 bayes_pls_golite062009
  • actin filament binding
  • 1.58451318432641 bayes_pls_golite062009
  • integrin binding
  • 1.00016212897166 bayes_pls_golite062009
  • protein complex binding
  • 0.895042950779324 bayes_pls_golite062009
  • receptor binding
  • 0.497776738275844 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle