YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

small nucleolar ribonucleoprotein complex 1.7053E-10 5 72 5 6292
nuclear outer membrane 4.2446E-10 5 86 5 6292
nuclear membrane 7.8546E-10 5 97 5 6292
outer membrane 1.7149E-8 5 178 5 6292
organelle outer membrane 1.7149E-8 5 178 5 6292
nuclear envelope 3.0132E-8 5 199 5 6292
nuclear membrane-endoplasmic reticulum network 6.5365E-8 5 232 5 6292
endomembrane system 9.8903E-7 5 398 5 6292
envelope 3.2702E-6 5 505 5 6292
organelle envelope 3.2702E-6 5 505 5 6292
ribonucleoprotein complex 3.5735E-6 5 514 5 6292
nucleolus 5.9889E-6 5 211 4 6292
membrane part 1.2719E-5 5 662 5 6292
organelle membrane 1.5885E-5 5 692 5 6292
nuclear lumen 1.2511E-4 5 453 4 6292
nuclear part 1.6432E-4 5 1103 5 6292
membrane 2.4854E-4 5 1198 5 6292
organelle lumen 5.503E-4 5 660 4 6292
intracellular organelle lumen 5.503E-4 5 660 4 6292
membrane-enclosed lumen 6.9283E-4 5 700 4 6292
macromolecular complex 1.1794E-3 5 1635 5 6292
box H/ACA snoRNP complex 1.5888E-3 5 2 1 6292
non-membrane-bounded organelle 2.3579E-3 5 959 4 6292
intracellular non-membrane-bounded organelle 2.3579E-3 5 959 4 6292
nucleus 3.5796E-3 5 2041 5 6292
small-subunit processome 4.7604E-3 5 6 1 6292
organelle part 6.2578E-3 5 2282 5 6292
intracellular organelle part 6.2578E-3 5 2282 5 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA processing 3.2245E-9 5 128 5 6292
rRNA metabolic process 4.553E-9 5 137 5 6292
ncRNA processing 4.4524E-8 5 215 5 6292
ncRNA metabolic process 1.095E-7 5 257 5 6292
rRNA modification 1.9594E-7 5 18 3 6292
ribosome biogenesis 4.8924E-7 5 346 5 6292
ribonucleoprotein complex biogenesis 7.2351E-7 5 374 5 6292
RNA processing 7.8377E-7 5 380 5 6292
maturation of SSU-rRNA 7.7299E-6 5 59 3 6292
RNA modification 1.2982E-5 5 70 3 6292
cellular component biogenesis 1.6117E-5 5 694 5 6292
RNA metabolic process 7.942E-5 5 954 5 6292
gene expression 3.5034E-4 5 1283 5 6292
nucleic acid metabolic process 5.7208E-4 5 1415 5 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 9.5045E-4 5 1566 5 6292
cellular nitrogen compound metabolic process 1.7545E-3 5 1770 5 6292
nitrogen compound metabolic process 1.8612E-3 5 1791 5 6292
ncRNA 5'-end processing 2.3825E-3 5 3 1 6292
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.3825E-3 5 3 1 6292
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.3825E-3 5 3 1 6292
rRNA 5'-end processing 2.3825E-3 5 3 1 6292
RNA 5'-end processing 2.3825E-3 5 3 1 6292
rRNA pseudouridine synthesis 3.1756E-3 5 4 1 6292
maturation of 5.8S rRNA 3.1756E-3 5 4 1 6292
cleavage involved in rRNA processing 3.1756E-3 5 4 1 6292
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.1756E-3 5 4 1 6292
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.1756E-3 5 4 1 6292
endonucleolytic cleavage involved in rRNA processing 3.1756E-3 5 4 1 6292
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.1756E-3 5 4 1 6292
snoRNA 3'-end processing 3.9682E-3 5 5 1 6292
snoRNA processing 5.552E-3 5 7 1 6292
cellular macromolecule metabolic process 6.2991E-3 5 2285 5 6292
macromolecule modification 6.4022E-3 5 569 3 6292
pseudouridine synthesis 7.1338E-3 5 9 1 6292
macromolecule metabolic process 7.2329E-3 5 2349 5 6292
ncRNA 3'-end processing 9.5026E-3 5 12 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA primary transcript binding 3.9682E-3 5 5 1 6292
pseudouridylate synthase activity 3.9682E-3 5 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle