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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

small nuclear ribonucleoprotein complex 6.3853E-17 8 63 8 6292
U4/U6 x U5 tri-snRNP complex 3.4756E-16 8 32 7 6292
ribonucleoprotein complex 1.8861E-9 8 514 8 6292
U6 snRNP 2.2161E-7 8 11 3 6292
nuclear part 8.7333E-7 8 1103 8 6292
macromolecular complex 2.0527E-5 8 1635 8 6292
nucleus 1.2145E-4 8 2041 8 6292
U5 snRNP 1.2776E-4 8 14 2 6292
organelle part 2.9704E-4 8 2282 8 6292
intracellular organelle part 2.9704E-4 8 2282 8 6292
small nucleolar ribonucleoprotein complex 3.4584E-3 8 72 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear mRNA splicing, via spliceosome 2.8226E-15 8 99 8 6292
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3.068E-15 8 100 8 6292
RNA splicing, via transesterification reactions 5.374E-15 8 107 8 6292
RNA splicing 3.036E-14 8 132 8 6292
mRNA processing 1.1951E-13 8 156 8 6292
mRNA metabolic process 1.5167E-12 8 213 8 6292
RNA processing 1.6507E-10 8 380 8 6292
RNA metabolic process 2.7241E-7 8 954 8 6292
gene expression 2.9372E-6 8 1283 8 6292
nucleic acid metabolic process 6.4427E-6 8 1415 8 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 1.4527E-5 8 1566 8 6292
cellular nitrogen compound metabolic process 3.8773E-5 8 1770 8 6292
nitrogen compound metabolic process 4.2618E-5 8 1791 8 6292
cellular macromolecule metabolic process 3.0018E-4 8 2285 8 6292
macromolecule metabolic process 3.7455E-4 8 2349 8 6292
primary metabolic process 2.0036E-3 8 2896 8 6292
assembly of spliceosomal tri-snRNP 2.5415E-3 8 2 1 6292
spliceosomal snRNP assembly 2.5415E-3 8 2 1 6292
cellular metabolic process 2.9013E-3 8 3033 8 6292
mRNA catabolic process 3.1803E-3 8 69 2 6292
generation of catalytic spliceosome for first transesterification step 3.8101E-3 8 3 1 6292
metabolic process 3.9991E-3 8 3157 8 6292
RNA catabolic process 4.2539E-3 8 80 2 6292
ribonucleoprotein complex assembly 5.5921E-3 8 92 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

snRNA binding 1.4121E-5 8 5 2 6292
RNA binding 6.6069E-4 8 367 4 6292
U6 snRNA binding 1.2715E-3 8 1 1 6292
binding 1.4278E-3 8 1294 6 6292
nucleotide binding 2.3343E-3 8 59 2 6292
U5 snRNA binding 2.5415E-3 8 2 1 6292
nucleic acid binding 6.1432E-3 8 666 4 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle