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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribonucleoprotein complex 3.5735E-6 5 514 5 6292
90S preribosome 6.8389E-5 5 17 2 6292
preribosome 2.8058E-4 5 34 2 6292
cytosolic small ribosomal subunit 3.5115E-4 5 38 2 6292
macromolecular complex 1.1794E-3 5 1635 5 6292
small ribosomal subunit 1.2981E-3 5 73 2 6292
box C/D snoRNP complex 1.5888E-3 5 2 1 6292
nuclear outer membrane 1.7979E-3 5 86 2 6292
nuclear membrane 2.2823E-3 5 97 2 6292
cytosolic ribosome 2.4722E-3 5 101 2 6292
cytosolic part 3.5891E-3 5 122 2 6292
outer membrane 7.5233E-3 5 178 2 6292
organelle outer membrane 7.5233E-3 5 178 2 6292
ribosomal subunit 7.9403E-3 5 183 2 6292
nuclear envelope 9.3452E-3 5 199 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

maturation of SSU-rRNA 7.7299E-6 5 59 3 6292
ribosome biogenesis 4.3019E-5 5 346 4 6292
ribonucleoprotein complex biogenesis 5.8585E-5 5 374 4 6292
rRNA processing 7.9834E-5 5 128 3 6292
rRNA metabolic process 9.7825E-5 5 137 3 6292
gene expression 3.5034E-4 5 1283 5 6292
ncRNA processing 3.7398E-4 5 215 3 6292
ncRNA metabolic process 6.3367E-4 5 257 3 6292
cellular component biogenesis 6.6989E-4 5 694 4 6292
translation 1.9341E-3 5 376 3 6292
RNA processing 1.9946E-3 5 380 3 6292
cellular macromolecule metabolic process 6.2991E-3 5 2285 5 6292
macromolecule metabolic process 7.2329E-3 5 2349 5 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle