YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 10 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

small nucleolar ribonucleoprotein complex 3.6808E-10 10 72 6 6292
nuclear outer membrane 1.0991E-9 10 86 6 6292
nuclear membrane 2.2962E-9 10 97 6 6292
ribonucleoprotein complex 7.3162E-8 10 514 8 6292
outer membrane 9.0127E-8 10 178 6 6292
organelle outer membrane 9.0127E-8 10 178 6 6292
preribosome 1.4589E-7 10 34 4 6292
nuclear envelope 1.7551E-7 10 199 6 6292
nuclear membrane-endoplasmic reticulum network 4.3733E-7 10 232 6 6292
nucleolus 8.8878E-6 10 211 5 6292
endomembrane system 1.0426E-5 10 398 6 6292
small-subunit processome 3.399E-5 10 6 2 6292
envelope 4.1226E-5 10 505 6 6292
organelle envelope 4.1226E-5 10 505 6 6292
membrane part 1.9209E-4 10 662 6 6292
organelle membrane 2.4641E-4 10 692 6 6292
nuclear lumen 3.5201E-4 10 453 5 6292
macromolecular complex 5.4804E-4 10 1635 8 6292
non-membrane-bounded organelle 1.4928E-3 10 959 6 6292
intracellular non-membrane-bounded organelle 1.4928E-3 10 959 6 6292
organelle lumen 2.0098E-3 10 660 5 6292
intracellular organelle lumen 2.0098E-3 10 660 5 6292
membrane-enclosed lumen 2.623E-3 10 700 5 6292
nuclear part 3.164E-3 10 1103 6 6292
membrane 4.8944E-3 10 1198 6 6292
nuclear microtubule 9.5019E-3 10 6 1 6292
preribosome, small subunit precursor 9.5019E-3 10 6 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA processing 1.025E-12 10 128 8 6292
rRNA metabolic process 1.7872E-12 10 137 8 6292
ribosome biogenesis 3.963E-11 10 346 9 6292
ncRNA processing 6.9391E-11 10 215 8 6292
ribonucleoprotein complex biogenesis 8.0128E-11 10 374 9 6292
ncRNA metabolic process 2.92E-10 10 257 8 6292
RNA processing 6.6673E-9 10 380 8 6292
maturation of SSU-rRNA 1.4834E-8 10 59 5 6292
cellular component biogenesis 2.0804E-8 10 694 9 6292
gene expression 4.872E-6 10 1283 9 6292
RNA metabolic process 9.1999E-6 10 954 8 6292
nucleic acid metabolic process 1.8614E-4 10 1415 8 6292
rRNA modification 3.4319E-4 10 18 2 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 3.9771E-4 10 1566 8 6292
cellular macromolecule metabolic process 7.3309E-4 10 2285 9 6292
macromolecule metabolic process 9.2762E-4 10 2349 9 6292
cellular nitrogen compound metabolic process 9.8474E-4 10 1770 8 6292
nitrogen compound metabolic process 1.0739E-3 10 1791 8 6292
RNA modification 5.1831E-3 10 70 2 6292
primary metabolic process 5.4001E-3 10 2896 9 6292
cellular metabolic process 7.9165E-3 10 3033 9 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

snoRNA binding 5.1292E-10 10 31 5 6292
RNA binding 1.2975E-4 10 367 5 6292
rRNA (adenine-N6,N6-)-dimethyltransferase activity 1.5893E-3 10 1 1 6292
rRNA (adenine) methyltransferase activity 1.5893E-3 10 1 1 6292
nucleic acid binding 2.094E-3 10 666 5 6292
binding 7.3119E-3 10 1294 6 6292
rRNA methyltransferase activity 7.9239E-3 10 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle