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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.488711633751]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

protein-DNA complex 8.0641E-5 2 57 2 6292
nuclear chromosome part 9.0721E-4 2 190 2 6292
DNA replication factor A complex 9.5344E-4 2 3 1 6292
nuclear chromosome 1.3075E-3 2 228 2 6292
chromosomal part 1.413E-3 2 237 2 6292
chromosome 1.8898E-3 2 274 2 6292
MCM complex 2.224E-3 2 7 1 6292
pre-replicative complex 5.0798E-3 2 16 1 6292
nuclear replisome 5.7138E-3 2 18 1 6292
replisome 5.7138E-3 2 18 1 6292
nuclear replication fork 6.3477E-3 2 20 1 6292
chromosome, telomeric region 8.5646E-3 2 27 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA unwinding involved in replication 4.5979E-6 2 14 2 6292
DNA geometric change 9.6001E-6 2 20 2 6292
DNA duplex unwinding 9.6001E-6 2 20 2 6292
DNA conformation change 8.3521E-5 2 58 2 6292
DNA-dependent DNA replication 1.678E-4 2 82 2 6292
DNA replication 3.791E-4 2 123 2 6292
DNA replication, synthesis of RNA primer 1.5888E-3 2 5 1 6292
postreplication repair 5.7138E-3 2 18 1 6292
double-strand break repair via homologous recombination 6.9813E-3 2 22 1 6292
recombinational repair 8.248E-3 2 26 1 6292
DNA metabolic process 8.631E-3 2 585 2 6292
DNA strand elongation 9.8303E-3 2 31 1 6292
DNA strand elongation involved in DNA replication 9.8303E-3 2 31 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ATP-dependent DNA helicase activity 5.7138E-3 2 18 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle