| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.613909475039] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| STM1 |
|
|
|
| SUB2 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| chromosome, telomeric region | 1.7735E-5 | 2 | 27 | 2 | 6292 |
| transcription export complex | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
| chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
| telomere cap complex | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| nuclear telomere cap complex | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| nuclear chromosome, telomeric region | 7.2981E-3 | 2 | 23 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| negative regulation of programmed cell death | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| negative regulation of cell death | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| anti-apoptosis | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| negative regulation of apoptosis | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| regulation of programmed cell death | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| regulation of cell death | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| regulation of apoptosis | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| negative regulation of cellular process | 1.5726E-3 | 2 | 250 | 2 | 6292 |
| negative regulation of biological process | 1.6107E-3 | 2 | 253 | 2 | 6292 |
| cell death | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| apoptosis | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| death | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| programmed cell death | 3.4937E-3 | 2 | 11 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| telomeric DNA binding | 3.811E-3 | 2 | 12 | 1 | 6292 |
| ATP-dependent RNA helicase activity | 8.8811E-3 | 2 | 28 | 1 | 6292 |
| RNA-dependent ATPase activity | 9.1975E-3 | 2 | 29 | 1 | 6292 |