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Protein Overview: DEGP1_ARATH

General Information:
Name(s) found: DEGP1_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • Protease Do-like 1, chloroplastic OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 439 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    chloroplast [IDA]
    thylakoid lumen [IDA]
    chloroplast thylakoid [IDA]
    chloroplast thylakoid lumen [IDA]
    thylakoid [IDA]
    chloroplast thylakoid membrane [IDA]
    Biological Process: protein catabolic process [TAS]
    proteolysis [ISS]
    photosystem II repair [IMP]
    Molecular Function: serine-type peptidase activity [IDA][ISS]
    serine-type endopeptidase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTTSCSLL LSSTLFLHSP PSSHLSFFNL SSSRSSPISL YPIRSKRYFR ILSKLSLNDN  60
   61 NRDDDDDTLH FTPFSAVKPF FLLCTSVALS FSLFAASPAV ESASAFVVST PKKLQTDELA 120
  121 TVRLFQENTP SVVYITNLAV RQDAFTLDVL EVPQGSGSGF VWDKQGHIVT NYHVIRGASD 180
  181 LRVTLADQTT FDAKVVGFDQ DKDVAVLRID APKNKLRPIP VGVSADLLVG QKVFAIGNPF 240
  241 GLDHTLTTGV ISGLRREISS AATGRPIQDV IQTDAAINPG NSGGPLLDSS GTLIGINTAI 300
  301 YSPSGASSGV GFSIPVDTVG GIVDQLVRFG KVTRPILGIK FAPDQSVEQL GVSGVLVLDA 360
  361 PPSGPAGKAG LQSTKRDGYG RLVLGDIITS VNGTKVSNGS DLYRILDQCK VGDEVTVEVL 420
  421 RGDHKEKISV TLEPKPDES

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..103] deduced N/A No confident structure predictions are available.
    2 View Details [104..439] PSI-BLAST 67.045757 Protease Do (DegP, HtrA), C-terminal domains; Protease Do (DegP, HtrA), catalytic domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • peptidase activity
    		•  4.45528883298499 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  4.08053412162226 bayes_pls_golite062009
  • endopeptidase activity
    		•  3.78841204092284 bayes_pls_golite062009
  • serine-type peptidase activity
    		•  3.58347664461084 bayes_pls_golite062009
  • serine hydrolase activity
    		•  3.58106288341801 bayes_pls_golite062009
  • serine-type endopeptidase activity
    		•  3.36658782366155 bayes_pls_golite062009
  • hydrolase activity
    		•  2.78416408149092 bayes_pls_golite062009
  • catalytic activity
    		•  1.40927913545237 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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