General Information: |
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Name(s) found: |
BRCA1_RAT
[Swiss-Prot]
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Description(s) found:
SHOW ONLY BEST |
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Organism: | Rattus norvegicus |
Length: | 1817 amino acids |
Gene Ontology: |
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Cellular Component: |
condensed chromosome
[UNKNOWN][IEA]
nucleus [UNKNOWN][IEA] ribonucleoprotein complex [UNKNOWN] cytoplasm [UNKNOWN][IEA] mitochondrial matrix [IDA] BRCA1-A complex [UNKNOWN] protein complex [UNKNOWN] BRCA1-BARD1 complex [UNKNOWN] intracellular [IEA] nucleoplasm [UNKNOWN] |
Biological Process: |
negative regulation of fatty acid biosynthetic process
[UNKNOWN][ISS]
positive regulation of DNA repair [UNKNOWN] DNA repair [TAS] chordate embryonic development [UNKNOWN][IEA] response to organic substance [IEP] response to estrogen stimulus [UNKNOWN][IEP] centrosome cycle [UNKNOWN][IEA] DNA replication [UNKNOWN][IEA] double-strand break repair via homologous recombination [UNKNOWN] chromosome segregation [UNKNOWN] response to nutrient [IEP] DNA damage response, signal transduction resulting in induction of apoptosis [UNKNOWN] dosage compensation, by inactivation of X chromosome [UNKNOWN][IEA] brain development [IEP] postreplication repair [UNKNOWN] cell cycle [IEA] double-strand break repair [UNKNOWN] negative regulation of transcription [UNKNOWN] positive regulation of protein ubiquitination [UNKNOWN] G2/M transition DNA damage checkpoint [UNKNOWN] response to lipid [IEP] response to ionizing radiation [UNKNOWN] protein ubiquitination [UNKNOWN] |
Molecular Function: |
ubiquitin-protein ligase activity
[UNKNOWN]
zinc ion binding [IEA] identical protein binding [UNKNOWN] RNA binding [UNKNOWN] protein binding [UNKNOWN][IEA] transcription regulator activity [IEA] metal ion binding [IEA] damaged DNA binding [UNKNOWN][TAS] ligase activity [IEA] enzyme binding [UNKNOWN] |
Sequence: |
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Sequence: [PDR BLAST] [ProtParam] |
1 11 21 31 41 51 | | | | | | 1 MDLSAVRIQE VQNVLHAMQK ILECPICLEL IKEPVSTQCD HIFCKFCMLK LLNQKKGPSQ 60 61 CPLCKNEITK RSLQGSARFS QLVEELLKII DAFELDTGMQ CANGFSFSKK KNSSSELLNE 120 121 DASIIQSVGY RNRVKKLQQI ESGSATLKDS LSVQLSNLGI VRSMKKNRQT QPQNKSVYIA 180 181 LESDSSEERV NAPDGCSVRD QELFQIAPGG AGDEGKLNSA KKAACDFSEG IRNIEHHQCS 240 241 DKDLNPTENH ATERHPEKCP RISVANVHVE PCGTDARASS LQRGTRSLLF TEDRLDAEKA 300 301 EFCDRSKQSG AAVSQQSRWA DSKETCNGRP VPRTEGKADP NVDSLCGRKQ WNHPKSLCPE 360 361 NSGATTDVPW ITLNSSIQKV NEWFSRTGEM LTSDNASDRR PASNAEAAVV LEVSNEVDGC 420 421 FSSSKKIDLV APDPDNAVMC TSGRDFSKPV ENIINDKIFG KTYQRKGSRP HLNHVTEIIG 480 481 TFTTEPQIIQ EQPFTNKLKR KRSTCLHPED FIKKADLTVV QRISENLNQG TDQMEPNDQA 540 541 MSITSNGQEN RATGNDLQRG RNAHPIESLR KEPAFTAKAK SISNSISDLE VELNVHSSKA 600 601 PKKNRLRRKS TRCVLPLEPI SRNPSPPTCA ELQIESCGSS EETKKNNSNQ TPAGHIREPQ 660 661 LIEDTEPAAD AKKNEPNEHI RKRSASDAFP EEKLMNKAGL LTSCSSPRKP QGPVNPSPER 720 721 KGIEQLEMCQ MPDNNKELGD LVLGGEPSGK PTEPSEESTS VSLVPDTDYD TQNSVSILEA 780 781 NTVRYARTGS VQCMTQFVAS ENPKELVHGS NNAGSGSECF KHPLRHELNH NQETIEMEDS 840 841 ELDTQYLQNT FQVSKRQSFA LFSKLRSPQK DCTLVGARSV PSREPSPKVT SRGEQKERQG 900 901 QEESEISHVQ AVTVTVGLPV PCQEGKPGAV TMCADVSRLC PSSHYRSCEN GLNTTDKSGI 960 961 SQNSHFRQSV SPLRSSIKTD NRKTLTEGRF EKHTERGMGN ETAVQSTIHT ISLNNRGDAC1020 1021 LEASSGSVIE VHSTGENVQG QLDRNRGPKV NTVSLLDSTQ PGVSKQSAPV SDKYLEIKQE1080 1081 SKAVSADFSP CLFSDHLEKP MRSDKTFQVC SETPDDLLDD VEIQENASFG EGGITEKSAI1140 1141 FNGSVLRRES SRSPSPVTHA SKSRSLHRGS RKLEFSEESD STEDEDLPCF QHLLSRVSST1200 1201 PELTRCSSVV TQRVPEKAKG TQAPRKSSIS DCNNEVILGE ASQEYQFSED AKCSGSMFSS1260 1261 QHSAALGSPA NALSQDPDFN PPSKQRRHQA ENEEAFLSDK ELISDHEDMA ACLEEASDQE1320 1321 EDSIIPDSVA SGYESEANLS EDCSQSDILT TQQRATMKDN LIKLQQEMAQ LEAVLEQHGS1380 1381 QPSGHPPCLP ADPCALEDLP DPEQNRSGTA ILTSKNINEN PVSQNPKRAC DDKSQPQPPD1440 1441 GLPSGDKESG MRRPSPFKSP LTSSRCSARG HSRSLQNRNS TSQEELLQPA XLEKSCEPHN1500 1501 LTGRSCLPRQ DLEGTPYPES GIRLVSSRDP DSESPKVSAL VCTAPASTSA LKISQGQVAG1560 1561 SCRSPAAGGA DTAVVEIVSK IKPEVTSPKE RAERDISMVV SGLTPKEVMI VQKFAEKYRL1620 1621 ALTDVITEET THVIIKTDAE FVCERTLKYF LGIAGGKWIV SYSWVIKSIQ ERKLLSVHEF1680 1681 EVKGDVVTGS NHQGPRRSRE SQEKLFEGLQ IYCCEPFTNM PKDELERMLQ LCGASVVKEL1740 1741 PLLTRDTGAH PIVLVQPSAW TEDNDCPDIG QLCKGRLVMW DWVLDSISVY RCRDLDAYLV1800 1801 QNITCGRDGS EPQDSND |
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Protein predicted to be: | GLOBULAR (No transmembrane regions or signal peptide) |
Confidence of classification: | 0.99 |
Source: Reynolds et al. (2008)