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Protein Overview: 4MMP_ARATH

General Information:
Name(s) found: 4MMP_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|4895247|gb|AAD32832.1|AC007659_14 putative metalloproteinase [Arabidopsis thaliana] [NCBI NR]
  • gi|31711730|gb|AAP68221.1| At2g45040 [Arabidopsis thaliana] [NCBI NR]
  • gi|26452204|dbj|BAC43190.1| putative metalloproteinase [Arabidopsis thaliana] [NCBI NR]
  • pir||G84885 probable metalloproteinase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15225398|ref|NP_182030.1| matrix metalloproteinase [Arabidopsis thaliana] [NCBI NR]
  • Metalloendoproteinase 4-MMP OS=Arabidopsis thaliana GN=4MMP PE=1 SV=1 [Swiss-Prot]
  • (Q8GWW6) Putative metalloproteinase (At2g45040) [athaliana3702.FASTAC.txt]
  • At2g45040 [Arabidopsis thaliana]gi|26452204|dbj|BAC43190.1| putative metalloproteinase [Arabidopsis thaliana]gi|4895247|gb|AAD32832.1| putative metalloproteinase [Arabidopsis thaliana]gi|25408919|pir||G84885 probable metalloproteinase [imported] - Arab [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Matrix metalloproteinase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | matrix metalloproteinase | chr2:18584768-18585796 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative metalloproteinase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At2g45040 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • metalloendopeptidase/ metallopeptidase/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Matrixin family protein | chr2:18577693-18578721 FORWARD LENGTH=342 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At2g45040 OS=Arabidopsis thaliana GN=At2g45040 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 342 amino acids

    Gene Ontology:
    Cellular Component: anchored to membrane [TAS]
    Biological Process: proteolysis [IEA][ISS]
    metabolic process [IEA]
    Molecular Function: metalloendopeptidase activity [IEA][ISS]
    metallopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHHHHHPCNR KPFTTIFSFF LLYLNLHNQQ IIEARNPSQF TTNPSPDVSI PEIKRHLQQY  60
   61 GYLPQNKESD DVSFEQALVR YQKNLGLPIT GKPDSDTLSQ ILLPRCGFPD DVEPKTAPFH 120
  121 TGKKYVYFPG RPRWTRDVPL KLTYAFSQEN LTPYLAPTDI RRVFRRAFGK WASVIPVSFI 180
  181 ETEDYVIADI KIGFFNGDHG DGEPFDGVLG VLAHTFSPEN GRLHLDKAET WAVDFDEEKS 240
  241 SVAVDLESVA VHEIGHVLGL GHSSVKDAAM YPTLKPRSKK VNLNMDDVVG VQSLYGTNPN 300
  301 FTLNSLLASE TSTNLADGSR IRSQGMIYST LSTVIALCFL NW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..342] PSI-BLAST 73.69897 X-ray structure of human proMMP-1: New insights into collagenase action

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • peptidase activity
    		•  5.33358263548929 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  4.99457783001146 bayes_pls_golite062009
  • endopeptidase activity
    		•  4.16532996235931 bayes_pls_golite062009
  • metallopeptidase activity
    		•  3.94798058866011 bayes_pls_golite062009
  • metalloendopeptidase activity
    		•  3.43236442601127 bayes_pls_golite062009
  • hydrolase activity
    		•  2.63109625301237 bayes_pls_golite062009
  • receptor binding
    		•  2.39767049122449 bayes_pls_golite062009
  • exopeptidase activity
    		•  2.07461908743946 bayes_pls_golite062009
  • binding
    		•  1.08558665967526 bayes_pls_golite062009
  • catalytic activity
    		•  0.891187593353827 bayes_pls_golite062009
  • growth factor activity
    		•  0.720944017870466 bayes_pls_golite062009
  • integrin binding
    		•  0.57684135424992 bayes_pls_golite062009
  • zinc ion binding
    		•  0.49304764842799 bayes_pls_golite062009
  • aminopeptidase activity
    		•  0.489265029264191 bayes_pls_golite062009
  • serine hydrolase activity
    		•  0.393080846858665 bayes_pls_golite062009
  • serine-type peptidase activity
    		•  0.374597710524442 bayes_pls_golite062009
  • protein binding
    		•  0.2751534129453 bayes_pls_golite062009
  • peptidyl-dipeptidase activity
    		•  0.27229268642689 bayes_pls_golite062009
  • serine-type endopeptidase activity
    		•  0.252655558968584 bayes_pls_golite062009
  • cytokine receptor binding
    		•  0.0255053415182105 bayes_pls_golite062009
  • ion binding
    		•  0.0127744064783182 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.48

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle