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Protein Overview: RFA1D_ARATH

General Information:
Name(s) found: RFA1D_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
SHOW ALL
  • Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana GN=RPA1D PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 629 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: DNA replication [IEA][ISS]
    Molecular Function: nucleic acid binding [IEA]
    DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTSVTPDAI STVLSNPSFD SSSDRSEIVV QVVDLKPIGN RYTFSANDGK TKVKAMFTAS  60
   61 LTPEIISGKI QNLGLIRLID FTVNDISSKS TKYFLVTKCE AVGSVLDSEI NLDSKSGEEE 120
  121 AREPKKQKLE HSPVSPLNDV VSTGITLKPK QEFVAKSASQ IMSEQRGNAA PAARMAMTRR 180
  181 VHPLVSLNPY QGNWTIKVRV TNKGVMRNYK NARGEGCVFN VELTDEEGTQ IQATMFNDAA 240
  241 RKFFDRFQLG KVYYISRGSL KLANKQFKTV QNDYEMTLNE NSEVEEASSE EMFIPETKFN 300
  301 FVPIEELGLY VNQKELIDLI GVVQSVSPTM SIRRRTDNEM IPKRDITLAD ESRKTVVVSL 360
  361 WNDLATGIGQ ELLDMADQSP VIAIKSLKVG DFQGVSLSTI SRSNVVINPE SPEAKKLKSW 420
  421 FDSEGKEISM SSIGSGMSPS AKNGSRSLYT DRVLLSHITS NPSLFEEKPV FFSTRAYISF 480
  481 IKPDQTMWYQ ACKTCNKKVT EALDSGYWCE GCQRKYEECS LRYIMAVKVT DSSGETWISS 540
  541 FNDEAEKILG CSADELNKLK SEEGEVNEYQ TKLKEATWSS HVFRVSVTQN EYNGEKRQRV 600
  601 TVKGVAPLDF AAETRLLLQD ISNKNKTSQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..174] PSI-BLAST 28.0 N-terminal domain of the RPA70 subunit of human replication protein A.
    2 View Details [175..447] PSI-BLAST 58.0 Replication protein A 70 KDa subunit (RPA70)
    3 View Details [448..629] PSI-BLAST 47.09691 Replication protein A 70 KDa subunit (RPA70)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • telomeric DNA binding
    		•  7.07761964836826 bayes_pls_golite062009
  • single-stranded telomeric DNA binding
    		•  6.04637014849887 bayes_pls_golite062009
  • telomerase inhibitor activity
    		•  5.40477712257453 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.02967008021862 bayes_pls_golite062009
  • DNA binding
    		•  3.62735703519187 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  3.59212997362902 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  3.53214384646348 bayes_pls_golite062009
  • binding
    		•  2.83465364476231 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  2.25006883439646 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.20239961025491 bayes_pls_golite062009
  • structural molecule activity
    		•  2.07809455998137 bayes_pls_golite062009
  • protein binding
    		•  1.20309946451799 bayes_pls_golite062009
  • ribonuclease activity
    		•  1.19236946227657 bayes_pls_golite062009
  • DNA helicase activity
    		•  1.12203697857261 bayes_pls_golite062009
  • transcription factor activity
    		•  1.05816813143865 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.86170694706755 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.79554655100991 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.79554655100991 bayes_pls_golite062009
  • hydrolase activity
    		•  0.724860465280978 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.638831894247026 bayes_pls_golite062009
  • nuclease activity
    		•  0.57381531077345 bayes_pls_golite062009
  • DEAD/H-box RNA helicase binding
    		•  0.440977654731901 bayes_pls_golite062009
  • translation regulator activity
    		•  0.41164963411369 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.378383789953688 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.360862776629591 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.325774164899685 bayes_pls_golite062009
  • four-way junction helicase activity
    		•  0.31769813397725 bayes_pls_golite062009
  • RNA binding
    		•  0.31028563542112 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.30211828233765 bayes_pls_golite062009
  • exonuclease activity
    		•  0.28313884527829 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.226916777208049 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.223941674251642 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.125256208482441 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.109774918833391 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.0954216620147701 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.0179535526984695 bayes_pls_golite062009
  • helicase activity
    		•  0.0121541775159524 bayes_pls_golite062009
    2
    Term Confidence Notes
  • telomeric DNA binding
    		•  7.07761964836826 bayes_pls_golite062009
  • single-stranded telomeric DNA binding
    		•  6.04637014849887 bayes_pls_golite062009
  • telomerase inhibitor activity
    		•  5.40477712257453 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.02967008021862 bayes_pls_golite062009
  • DNA binding
    		•  3.62735703519187 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  3.59212997362902 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  3.53214384646348 bayes_pls_golite062009
  • binding
    		•  2.83465364476231 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  2.25006883439646 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.20239961025491 bayes_pls_golite062009
  • structural molecule activity
    		•  2.07809455998137 bayes_pls_golite062009
  • protein binding
    		•  1.20309946451799 bayes_pls_golite062009
  • ribonuclease activity
    		•  1.19236946227657 bayes_pls_golite062009
  • DNA helicase activity
    		•  1.12203697857261 bayes_pls_golite062009
  • transcription factor activity
    		•  1.05816813143865 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.86170694706755 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.79554655100991 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.79554655100991 bayes_pls_golite062009
  • hydrolase activity
    		•  0.724860465280978 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.638831894247026 bayes_pls_golite062009
  • nuclease activity
    		•  0.57381531077345 bayes_pls_golite062009
  • DEAD/H-box RNA helicase binding
    		•  0.440977654731901 bayes_pls_golite062009
  • translation regulator activity
    		•  0.41164963411369 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.378383789953688 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.360862776629591 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.325774164899685 bayes_pls_golite062009
  • four-way junction helicase activity
    		•  0.31769813397725 bayes_pls_golite062009
  • RNA binding
    		•  0.31028563542112 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.30211828233765 bayes_pls_golite062009
  • exonuclease activity
    		•  0.28313884527829 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.226916777208049 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.223941674251642 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.125256208482441 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.109774918833391 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.0954216620147701 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.0179535526984695 bayes_pls_golite062009
  • helicase activity
    		•  0.0121541775159524 bayes_pls_golite062009
    3
    Term Confidence Notes
  • telomeric DNA binding
    		•  7.07761964836826 bayes_pls_golite062009
  • single-stranded telomeric DNA binding
    		•  6.04637014849887 bayes_pls_golite062009
  • telomerase inhibitor activity
    		•  5.40477712257453 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.02967008021862 bayes_pls_golite062009
  • DNA binding
    		•  3.62735703519187 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  3.59212997362902 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  3.53214384646348 bayes_pls_golite062009
  • binding
    		•  2.83465364476231 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  2.25006883439646 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.20239961025491 bayes_pls_golite062009
  • structural molecule activity
    		•  2.07809455998137 bayes_pls_golite062009
  • protein binding
    		•  1.20309946451799 bayes_pls_golite062009
  • ribonuclease activity
    		•  1.19236946227657 bayes_pls_golite062009
  • DNA helicase activity
    		•  1.12203697857261 bayes_pls_golite062009
  • transcription factor activity
    		•  1.05816813143865 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.86170694706755 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.79554655100991 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.79554655100991 bayes_pls_golite062009
  • hydrolase activity
    		•  0.724860465280978 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.638831894247026 bayes_pls_golite062009
  • nuclease activity
    		•  0.57381531077345 bayes_pls_golite062009
  • DEAD/H-box RNA helicase binding
    		•  0.440977654731901 bayes_pls_golite062009
  • translation regulator activity
    		•  0.41164963411369 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.378383789953688 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.360862776629591 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.325774164899685 bayes_pls_golite062009
  • four-way junction helicase activity
    		•  0.31769813397725 bayes_pls_golite062009
  • RNA binding
    		•  0.31028563542112 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.30211828233765 bayes_pls_golite062009
  • exonuclease activity
    		•  0.28313884527829 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.226916777208049 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.223941674251642 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.125256208482441 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.109774918833391 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.0954216620147701 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.0179535526984695 bayes_pls_golite062009
  • helicase activity
    		•  0.0121541775159524 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle