| Protein: | RFA1D_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 629 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RFA1D_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
551.0 | [0..1] | [623..55] |
|
Region A: Residues: [1-174] |
1 11 21 31 41 51
| | | | | |
1 MQTSVTPDAI STVLSNPSFD SSSDRSEIVV QVVDLKPIGN RYTFSANDGK TKVKAMFTAS 60
61 LTPEIISGKI QNLGLIRLID FTVNDISSKS TKYFLVTKCE AVGSVLDSEI NLDSKSGEEE 120
121 AREPKKQKLE HSPVSPLNDV VSTGITLKPK QEFVAKSASQ IMSEQRGNAA PAAR
|
| Detection Method: |  |
| Confidence: | 28.0 |
| Match: | 2b29A |
| Description: | N-terminal domain of the RPA70 subunit of human replication protein A. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| telomeric DNA binding | 7.07761964836826 | bayes_pls_golite062009 |
| single-stranded telomeric DNA binding | 6.04637014849887 | bayes_pls_golite062009 |
| telomerase inhibitor activity | 5.40477712257453 | bayes_pls_golite062009 |
| nucleic acid binding | 4.02967008021862 | bayes_pls_golite062009 |
| DNA binding | 3.62735703519187 | bayes_pls_golite062009 |
| single-stranded DNA binding | 3.59212997362902 | bayes_pls_golite062009 |
| structure-specific DNA binding | 3.53214384646348 | bayes_pls_golite062009 |
| binding | 2.83465364476231 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.25006883439646 | bayes_pls_golite062009 |
| transcription regulator activity | 2.20239961025491 | bayes_pls_golite062009 |
| structural molecule activity | 2.07809455998137 | bayes_pls_golite062009 |
| protein binding | 1.20309946451799 | bayes_pls_golite062009 |
| ribonuclease activity | 1.19236946227657 | bayes_pls_golite062009 |
| DNA helicase activity | 1.12203697857261 | bayes_pls_golite062009 |
| transcription factor activity | 1.05816813143865 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.86170694706755 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 0.79554655100991 | bayes_pls_golite062009 |
| RNA polymerase activity | 0.79554655100991 | bayes_pls_golite062009 |
| hydrolase activity | 0.724860465280978 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.638831894247026 | bayes_pls_golite062009 |
| nuclease activity | 0.57381531077345 | bayes_pls_golite062009 |
| DEAD/H-box RNA helicase binding | 0.440977654731901 | bayes_pls_golite062009 |
| translation regulator activity | 0.41164963411369 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.378383789953688 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.360862776629591 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.325774164899685 | bayes_pls_golite062009 |
| four-way junction helicase activity | 0.31769813397725 | bayes_pls_golite062009 |
| RNA binding | 0.31028563542112 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.30211828233765 | bayes_pls_golite062009 |
| exonuclease activity | 0.28313884527829 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.226916777208049 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.223941674251642 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.125256208482441 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.109774918833391 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.0954216620147701 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.0179535526984695 | bayes_pls_golite062009 |
| helicase activity | 0.0121541775159524 | bayes_pls_golite062009 |
|
Region A: Residues: [175-447] |
1 11 21 31 41 51
| | | | | |
1 MAMTRRVHPL VSLNPYQGNW TIKVRVTNKG VMRNYKNARG EGCVFNVELT DEEGTQIQAT 60
61 MFNDAARKFF DRFQLGKVYY ISRGSLKLAN KQFKTVQNDY EMTLNENSEV EEASSEEMFI 120
121 PETKFNFVPI EELGLYVNQK ELIDLIGVVQ SVSPTMSIRR RTDNEMIPKR DITLADESRK 180
181 TVVVSLWNDL ATGIGQELLD MADQSPVIAI KSLKVGDFQG VSLSTISRSN VVINPESPEA 240
241 KKLKSWFDSE GKEISMSSIG SGMSPSAKNG SRS
|
| Detection Method: | |
| Confidence: | 58.0 |
| Match: | 1jmcA |
| Description: | Replication protein A 70 KDa subunit (RPA70) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| telomeric DNA binding | 7.07761964836826 | bayes_pls_golite062009 |
| single-stranded telomeric DNA binding | 6.04637014849887 | bayes_pls_golite062009 |
| telomerase inhibitor activity | 5.40477712257453 | bayes_pls_golite062009 |
| nucleic acid binding | 4.02967008021862 | bayes_pls_golite062009 |
| DNA binding | 3.62735703519187 | bayes_pls_golite062009 |
| single-stranded DNA binding | 3.59212997362902 | bayes_pls_golite062009 |
| structure-specific DNA binding | 3.53214384646348 | bayes_pls_golite062009 |
| binding | 2.83465364476231 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.25006883439646 | bayes_pls_golite062009 |
| transcription regulator activity | 2.20239961025491 | bayes_pls_golite062009 |
| structural molecule activity | 2.07809455998137 | bayes_pls_golite062009 |
| protein binding | 1.20309946451799 | bayes_pls_golite062009 |
| ribonuclease activity | 1.19236946227657 | bayes_pls_golite062009 |
| DNA helicase activity | 1.12203697857261 | bayes_pls_golite062009 |
| transcription factor activity | 1.05816813143865 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.86170694706755 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 0.79554655100991 | bayes_pls_golite062009 |
| RNA polymerase activity | 0.79554655100991 | bayes_pls_golite062009 |
| hydrolase activity | 0.724860465280978 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.638831894247026 | bayes_pls_golite062009 |
| nuclease activity | 0.57381531077345 | bayes_pls_golite062009 |
| DEAD/H-box RNA helicase binding | 0.440977654731901 | bayes_pls_golite062009 |
| translation regulator activity | 0.41164963411369 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.378383789953688 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.360862776629591 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.325774164899685 | bayes_pls_golite062009 |
| four-way junction helicase activity | 0.31769813397725 | bayes_pls_golite062009 |
| RNA binding | 0.31028563542112 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.30211828233765 | bayes_pls_golite062009 |
| exonuclease activity | 0.28313884527829 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.226916777208049 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.223941674251642 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.125256208482441 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.109774918833391 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.0954216620147701 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.0179535526984695 | bayes_pls_golite062009 |
| helicase activity | 0.0121541775159524 | bayes_pls_golite062009 |
|
Region A: Residues: [448-629] |
1 11 21 31 41 51
| | | | | |
1 LYTDRVLLSH ITSNPSLFEE KPVFFSTRAY ISFIKPDQTM WYQACKTCNK KVTEALDSGY 60
61 WCEGCQRKYE ECSLRYIMAV KVTDSSGETW ISSFNDEAEK ILGCSADELN KLKSEEGEVN 120
121 EYQTKLKEAT WSSHVFRVSV TQNEYNGEKR QRVTVKGVAP LDFAAETRLL LQDISNKNKT 180
181 SQ
|
| Detection Method: | |
| Confidence: | 47.09691 |
| Match: | 1l1oC |
| Description: | Replication protein A 70 KDa subunit (RPA70) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| telomeric DNA binding | 7.07761964836826 | bayes_pls_golite062009 |
| single-stranded telomeric DNA binding | 6.04637014849887 | bayes_pls_golite062009 |
| telomerase inhibitor activity | 5.40477712257453 | bayes_pls_golite062009 |
| nucleic acid binding | 4.02967008021862 | bayes_pls_golite062009 |
| DNA binding | 3.62735703519187 | bayes_pls_golite062009 |
| single-stranded DNA binding | 3.59212997362902 | bayes_pls_golite062009 |
| structure-specific DNA binding | 3.53214384646348 | bayes_pls_golite062009 |
| binding | 2.83465364476231 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.25006883439646 | bayes_pls_golite062009 |
| transcription regulator activity | 2.20239961025491 | bayes_pls_golite062009 |
| structural molecule activity | 2.07809455998137 | bayes_pls_golite062009 |
| protein binding | 1.20309946451799 | bayes_pls_golite062009 |
| ribonuclease activity | 1.19236946227657 | bayes_pls_golite062009 |
| DNA helicase activity | 1.12203697857261 | bayes_pls_golite062009 |
| transcription factor activity | 1.05816813143865 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.86170694706755 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 0.79554655100991 | bayes_pls_golite062009 |
| RNA polymerase activity | 0.79554655100991 | bayes_pls_golite062009 |
| hydrolase activity | 0.724860465280978 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.638831894247026 | bayes_pls_golite062009 |
| nuclease activity | 0.57381531077345 | bayes_pls_golite062009 |
| DEAD/H-box RNA helicase binding | 0.440977654731901 | bayes_pls_golite062009 |
| translation regulator activity | 0.41164963411369 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.378383789953688 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.360862776629591 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.325774164899685 | bayes_pls_golite062009 |
| four-way junction helicase activity | 0.31769813397725 | bayes_pls_golite062009 |
| RNA binding | 0.31028563542112 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.30211828233765 | bayes_pls_golite062009 |
| exonuclease activity | 0.28313884527829 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.226916777208049 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.223941674251642 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.125256208482441 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.109774918833391 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.0954216620147701 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.0179535526984695 | bayes_pls_golite062009 |
| helicase activity | 0.0121541775159524 | bayes_pls_golite062009 |
