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Protein Overview: gi|26983846, gi|...

General Information:
Name(s) found: gi|7431376 [NCBI NR]
gi|7270284 [NCBI NR]
gi|4490303 [NCBI NR]
gi|26983846 [NCBI NR]
gi|15234163 [NCBI NR]
gi|13926213 [NCBI NR]
Description(s) found:
Found 14 descriptions.
SHOW ALL
  • pir||T05987 hypothetical protein F17M5.120 - Arabidopsis thaliana [NCBI NR]
  • gi|7270284|emb|CAB80053.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|4490303|emb|CAB38794.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|26983846|gb|AAN86175.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15234163|ref|NP_195062.1| terpene cyclase/mutase-related [Arabidopsis thaliana] [NCBI NR]
  • gi|13926213|gb|AAK49584.1|AF370578_1 putative protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 344 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum [IDA]
    vacuole [IDA]
    plasma membrane [IDA]
    Biological Process: metabolic process [IEA]
    terpenoid metabolic process [ISS]
    cellular metabolic process [IEA]
    Molecular Function: coenzyme binding [IEA]
    catalytic activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPKMPNTET ENMKILVTGS TGYLGARLCH VLLRRGHSVR ALVRRTSDLS DLPPEVELAY  60
   61 GDVTDYRSLT DACSGCDIVF HAAALVEPWL PDPSRFISVN VGGLKNVLEA VKETKTVQKI 120
  121 IYTSSFFALG STDGSVANEN QVHNERFFCT EYERSKAVAD KMALNAASEG VPIILLYPGV 180
  181 IFGPGKLTSA NMVARMLIER FNGRLPGYIG SGTDRYSFSH VDDVVEGHVA AMEKGRLGER 240
  241 YLLTGENASF KLVFDMAALI TGTKKPNFSI PLWAINAYGW LSVLISRVTG KLPLISPPTV 300
  301 TVLRHQWSYS CDKAKLELGY NPRSLKEGLE EMLPWLKSLG VIHY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..344] PSI-BLAST 59.0 dTDP-glucose 4,6-dehydratase (RmlB)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • steroid dehydrogenase activity
    		•  3.70115036051018 bayes_pls_golite062009
  • steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  3.56748749904419 bayes_pls_golite062009
  • oxidoreductase activity
    		•  3.09625241707629 bayes_pls_golite062009
  • retinol dehydrogenase activity
    		•  3.08644105481774 bayes_pls_golite062009
  • 3-alpha(17-beta)-hydroxysteroid dehydrogenase (NAD+) activity
    		•  1.80383455383329 bayes_pls_golite062009
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.65338499044318 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  1.47309297191111 bayes_pls_golite062009
  • ethanol binding
    		•  1.43137718523288 bayes_pls_golite062009
  • retinol binding
    		•  1.36627553306209 bayes_pls_golite062009
  • C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity
    		•  1.03845584151228 bayes_pls_golite062009
  • DNA binding
    		•  0.925435782369235 bayes_pls_golite062009
  • receptor activity
    		•  0.870552554168634 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  0.848495583450678 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.830735196151903 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.805690663404413 bayes_pls_golite062009
  • benzaldehyde dehydrogenase activity
    		•  0.74738022559788 bayes_pls_golite062009
  • fatty acid synthase activity
    		•  0.714637370305282 bayes_pls_golite062009
  • retinoid binding
    		•  0.67821643688355 bayes_pls_golite062009
  • alcohol dehydrogenase (NAD) activity
    		•  0.65743456407889 bayes_pls_golite062009
  • signal transducer activity
    		•  0.620476349006324 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.620476349006324 bayes_pls_golite062009
  • 11-beta-hydroxysteroid dehydrogenase activity
    		•  0.617411823427239 bayes_pls_golite062009
  • isoprenoid binding
    		•  0.56322670082984 bayes_pls_golite062009
  • binding
    		•  0.553666136934364 bayes_pls_golite062009
  • NAD or NADH binding
    		•  0.44922383360529 bayes_pls_golite062009
  • transcription factor activity
    		•  0.288669328257774 bayes_pls_golite062009
  • all-trans retinal binding
    		•  0.218888750914841 bayes_pls_golite062009
  • 3-oxoacyl-[acyl-carrier-protein] reductase activity
    		•  0.192594057004213 bayes_pls_golite062009
  • NADPH:quinone reductase activity
    		•  0.0435917990586205 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.79

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle