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Protein Overview: 1MMP_ARATH

General Information:
Name(s) found: 1MMP_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||E71433 probable metalloproteinase (EC 3.4.24.-) - Arabidopsis thaliana [NCBI NR]
  • gi|7268414|emb|CAB78706.1| proteinase like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|2245019|emb|CAB10439.1| proteinase like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15235820|ref|NP_193397.1| matrix metalloproteinase, putative [Arabidopsis thaliana] [NCBI NR]
  • Metalloendoproteinase 1-MMP OS=Arabidopsis thaliana GN=1MMP PE=1 SV=1 [Swiss-Prot]
  • (O23507) Proteinase homolog (Proteinase like protein) [athaliana3702.FASTAC.txt]
  • proteinase like protein [Arabidopsis thaliana]gi|2245019|emb|CAB10439.1| proteinase like protein [Arabidopsis thaliana]gi|7488133|pir||E71433 probable metalloproteinase (EC 3.4.24.-) - Arabidopsis thalianagi|15235820|ref|NP_193397.1| matrix metalloprot [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Matrix metalloproteinase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | matrix metalloproteinase, putative | chr4:9367418-9368512 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • metalloendopeptidase/ metallopeptidase/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • proteinase like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Matrixin family protein | chr4:9367396-9368490 REVERSE LENGTH=364 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Matrix metalloprotease domain-containing protein OS=Arabidopsis thaliana GN=dl4345c PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 364 amino acids

    Gene Ontology:
    Cellular Component: anchored to membrane [TAS]
    Biological Process: proteolysis [IEA][ISS]
    metabolic process [IEA]
    Molecular Function: metalloendopeptidase activity [IEA][ISS]
    metallopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRNLIYRRN RALCFVLILF CFPYRFGARN TPEAEQSTAK ATQIIHVSNS TWHDFSRLVD  60
   61 VQIGSHVSGV SELKRYLHRF GYVNDGSEIF SDVFDGPLES AISLYQENLG LPITGRLDTS 120
  121 TVTLMSLPRC GVSDTHMTIN NDFLHTTAHY TYFNGKPKWN RDTLTYAISK THKLDYLTSE 180
  181 DVKTVFRRAF SQWSSVIPVS FEEVDDFTTA DLKIGFYAGD HGDGLPFDGV LGTLAHAFAP 240
  241 ENGRLHLDAA ETWIVDDDLK GSSEVAVDLE SVATHEIGHL LGLGHSSQES AVMYPSLRPR 300
  301 TKKVDLTVDD VAGVLKLYGP NPKLRLDSLT QSEDSIKNGT VSHRFLSGNF IGYVLLVVGL 360
  361 ILFL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..364] PSI-BLAST 74.39794 X-ray structure of human proMMP-1: New insights into collagenase action

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • peptidase activity
    		•  5.33358263548929 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  4.99457783001146 bayes_pls_golite062009
  • endopeptidase activity
    		•  4.16532996235931 bayes_pls_golite062009
  • metallopeptidase activity
    		•  3.94798058866011 bayes_pls_golite062009
  • metalloendopeptidase activity
    		•  3.43236442601127 bayes_pls_golite062009
  • hydrolase activity
    		•  2.63109625301237 bayes_pls_golite062009
  • exopeptidase activity
    		•  2.07461908743946 bayes_pls_golite062009
  • catalytic activity
    		•  0.891187593353827 bayes_pls_golite062009
  • zinc ion binding
    		•  0.49304764842799 bayes_pls_golite062009
  • aminopeptidase activity
    		•  0.489265029264191 bayes_pls_golite062009
  • serine hydrolase activity
    		•  0.393080846858665 bayes_pls_golite062009
  • receptor binding
    		•  0.392341313566282 bayes_pls_golite062009
  • binding
    		•  0.391736565948141 bayes_pls_golite062009
  • serine-type peptidase activity
    		•  0.374597710524442 bayes_pls_golite062009
  • peptidyl-dipeptidase activity
    		•  0.27229268642689 bayes_pls_golite062009
  • serine-type endopeptidase activity
    		•  0.252655558968584 bayes_pls_golite062009
  • ion binding
    		•  0.038238114346522 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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