Protein Overview: ELC_ARATH

General Information:
Name(s) found:	ELC_ARATH [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|75273254\|sp\|Q9LHG8.1\|ELC_ARATH RecName: Full=Protein ELC; Short=AtELC; AltName: Full=Vacuolar protein-sorting-associated protein 23 homolog 1; AltName: Full=ESCRT-I complex subunit VPS23 homolog 1 [NCBI NR] gi\|22136968\|gb\|AAM91713.1\| unknown protein [Arabidopsis thaliana] [NCBI NR] gi\|21593369\|gb\|AAM65318.1\| unknown [Arabidopsis thaliana] [NCBI NR] gi\|18399596\|ref\|NP_566423.1\| ELC; ubiquitin binding [Arabidopsis thaliana] [NCBI NR] gi\|15810489\|gb\|AAL07132.1\| unknown protein [Arabidopsis thaliana] [NCBI NR] gi\|15795159\|dbj\|BAB03147.1\| mouse and human tumor susceptibility gene-like protein [Arabidopsis thaliana] [NCBI NR] gi\|12321968\|gb\|AAG51025.1\|AC069474_24 unknown protein; 81998-83194 [Arabidopsis thaliana] [NCBI NR] Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1 [Swiss-Prot] (Q9LHG8) Mouse and human tumor susceptibility gene-like protein (Hypothetical protein) [athaliana3702.FASTAC.txt] unknown [Arabidopsis thaliana]gi\|22136968\|gb\|AAM91713.1\| unknown protein [Arabidopsis thaliana]gi\|15810489\|gb\|AAL07132.1\| unknown protein [Arabidopsis thaliana]gi\|15795159\|dbj\|BAB03147.1\| mouse and human tumor susceptibility gene-like protein [Arabidop [nrdb_11152004_Chlamydomonas] Tax_Id=3702 Tumour susceptibility gene 101 (TSG101) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta] \| Symbols: ELC, ATELC \| ATELC/ELC; ubiquitin binding \| chr3:3944607-3945803 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta] unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta] unknown [Arabidopsis thaliana] [nr-271106-contam.fasta] unknown protein; 81998-83194 [Arabidopsis thaliana] [nr-271106-contam.fasta] mouse and human tumor susceptibility gene-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta] \| Symbols: ELC, ATELC \| Ubiquitin-conjugating enzyme/RWD-like protein \| chr3:3944600-3945796 REVERSE LENGTH=398 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
Organism:	Arabidopsis thaliana
Length:	398 amino acids
Gene Ontology:
Cellular Component:	early endosome [IDA] ESCRT I complex [ISS] late endosome [IDA] protein complex [IDA]
Biological Process:	cell division [IMP] trichome branching [IMP]
Molecular Function:	ubiquitin binding [IDA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPPPSNPQQ VQQFLSSALS QRGPSSVPYE ESNKWLIRQH LLNLISSYPS LEPKTASFMH  60
   61 NDGRSVNLLQ ADGTIPMPFH GVTYNIPVII WLLESYPRHP PCVYVNPTAD MIIKRPHAHV 120
  121 TPSGLVSLPY LQNWVYPSSN LVDLVSDLSA AFARDPPLYS RRRPQPPPPS PPTVYDSSLS 180
  181 RPPSADQSLP RPFPPSPYGG GVSRVQVQHV HHQQQSDDAA EVFKRNAINK MVEMVHSDLV 240
  241 SMRRAREAEA EELLSLQAGL KRREDELNIG LKEMVEEKET LEQQLQIISM NTDILDSWVR 300
  301 ENQGKTKNLV DLDVDNAFEC GDTLSKQMLE CTALDLAIED AIYSLDKSFQ DGVVPFDQYL 360
  361 RNVRLLSREQ FFHRATGSKV RAAQMEVQVA AIAGRLHS

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
small conjugating protein ligase activity	6.80727357703118	bayes_pls_golite062009
ubiquitin-protein ligase activity	6.75330204125607	bayes_pls_golite062009
acid-amino acid ligase activity	5.83782824833863	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	3.8110076681004	bayes_pls_golite062009
transcription regulator activity	2.21355731489173	bayes_pls_golite062009
nucleic acid binding	2.13970605403492	bayes_pls_golite062009
DNA binding	1.95596447916631	bayes_pls_golite062009
ligase activity	1.88059319399119	bayes_pls_golite062009
binding	1.75350658654805	bayes_pls_golite062009
transcription repressor activity	1.5236035191291	bayes_pls_golite062009
catalytic activity	0.891402822028799	bayes_pls_golite062009
SUMO ligase activity	0.843488104298821	bayes_pls_golite062009
protein binding	0.726328463755484	bayes_pls_golite062009
NEDD8 ligase activity	0.715654744941217	bayes_pls_golite062009
protein kinase activity	0.443948654247666	bayes_pls_golite062009
protein serine/threonine kinase activity	0.182854082413338	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.133142640608253	bayes_pls_golite062009
transcription corepressor activity	0.122859425935324	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0501858755083694	bayes_pls_golite062009
kinase activity	0.0500350353657541	bayes_pls_golite062009
transcription activator activity	0.0138208971172455	bayes_pls_golite062009
transcription factor binding	0.0104967529560147	bayes_pls_golite062009

No functions predicted.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.97

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..203]	PSI-BLAST	57.69897	Tumor susceptibility gene 101 (TSG101) UEV domain
2	View Details	[204..398]	PSI-BLAST	28.0	Heavy meromyosin subfragment

Protein Overview: ELC_ARATH

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: