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Protein Overview: CE30606

General Information:
Name(s) found: CE30606 [WormBase]
Description(s) found:
Found 22 descriptions.
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  • WBGene00015806 Putative SMARCAL1-like protein status:Partially_confirmed UniProt:Q8MNV7 protein_id:CCD63221.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 690 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: chromatin modification [IEALink to PubMed article]
    reproduction [IMP]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    nucleotide binding [IEALink to PubMed article]
    DNA binding [IEALink to PubMed article]
    ATP binding [IEALink to PubMed article]
    nucleoside-triphosphatase activity [IEALink to PubMed article]
    helicase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLTDEQRQA IAKKREEAIR RAAAYREREM QAAANATAST SSAAPPAPPK PVIPVMFSQN  60
   61 RQNFQPMKPT MNNSTKQSTI NNYIKQVQKP EPTSLIKPTI GVKLKLDIGD RIKIEFYPFH 120
  121 SAVIDLIKQV PSRNYDPAKR SWTVASSDHI TISNILKNAT AVKVELEPLP QNIIGLTNFK 180
  181 PKAAPSDLNT VMDPSLIERL FPYQKEGVIF ALERDGRILL ADEMGLGKSV QALTIARYYK 240
  241 ADWPLLIVCP ASVKGAWKKQ LNTFFPIIHR IFIVDKSSDP LPDVCTSNTV AIMSYEQMVL 300
  301 KHDILKKEKY RTIIFDESHM LKDGKARRTK VATDLSKVAL HVILLSGTPA LSRPSELFTQ 360
  361 IRLIDHKLFT NFHEFAIRYC DGKQGRFCFE AKGCTNSEEL AAIMFKRLMI RRLKADVLKD 420
  421 LPEKRREVVY VSGPTIDARM DDLQKARADY EKVNSMERKH ESLLEFYSLT GIVKAAAVCE 480
  481 HILENYFYPD APPRKVLIFA HHQIVLDTIQ VEVNKRKLGS IRIDGKTPSH RRTALCDSFQ 540
  541 TDDNIRVAVL SITAAGVGIT LTAASVVVFA EIHFNPGYLV QAEDRAHRVG QKDSVFVQYL 600
  601 IAKKTADDVM WNMVQQKLDV LGQVSLSSDT FRTADKMHLR FNDAAQPGIA EYLKKTPDTT 660
  661 IDEWEDPVEE KEDDDLEIIC DSPAPKRIKN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] deduced N/A No confident structure predictions are available.
    2 View Details [136..690] PSI-BLAST 74.39794 Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.64537357529343 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.51683451033161 bayes_pls_golite062009
  • DNA binding
    		•  2.12258000781149 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.09345198747025 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.49611313354225 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.2155186842031 bayes_pls_golite062009
  • helicase activity
    		•  1.16085745407703 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • transcription factor activity
    		•  0.887108427603557 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.72881469450553 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.59513742813869 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.59513742813869 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.249173645231486 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.243902356228423 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.22150712609541 bayes_pls_golite062009
  • protein binding
    		•  0.170837278876362 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.0781650226500197 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.69

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle