| Protein: | CE30606 |
| Organism: | Caenorhabditis elegans |
| Length: | 690 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30606.
| Description | E-value | Query Range |
Subject Range |
|
|
409.0 | [0..6] | [689..822] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MVLTDEQRQA IAKKREEAIR RAAAYREREM QAAANATAST SSAAPPAPPK PVIPVMFSQN 60
61 RQNFQPMKPT MNNSTKQSTI NNYIKQVQKP EPTSLIKPTI GVKLKLDIGD RIKIEFYPFH 120
121 SAVIDLIKQV PSRNY
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [136-690] |
1 11 21 31 41 51
| | | | | |
1 DPAKRSWTVA SSDHITISNI LKNATAVKVE LEPLPQNIIG LTNFKPKAAP SDLNTVMDPS 60
61 LIERLFPYQK EGVIFALERD GRILLADEMG LGKSVQALTI ARYYKADWPL LIVCPASVKG 120
121 AWKKQLNTFF PIIHRIFIVD KSSDPLPDVC TSNTVAIMSY EQMVLKHDIL KKEKYRTIIF 180
181 DESHMLKDGK ARRTKVATDL SKVALHVILL SGTPALSRPS ELFTQIRLID HKLFTNFHEF 240
241 AIRYCDGKQG RFCFEAKGCT NSEELAAIMF KRLMIRRLKA DVLKDLPEKR REVVYVSGPT 300
301 IDARMDDLQK ARADYEKVNS MERKHESLLE FYSLTGIVKA AAVCEHILEN YFYPDAPPRK 360
361 VLIFAHHQIV LDTIQVEVNK RKLGSIRIDG KTPSHRRTAL CDSFQTDDNI RVAVLSITAA 420
421 GVGITLTAAS VVVFAEIHFN PGYLVQAEDR AHRVGQKDSV FVQYLIAKKT ADDVMWNMVQ 480
481 QKLDVLGQVS LSSDTFRTAD KMHLRFNDAA QPGIAEYLKK TPDTTIDEWE DPVEEKEDDD 540
541 LEIICDSPAP KRIKN
|
| Detection Method: | |
| Confidence: | 74.39794 |
| Match: | 1z3iX |
| Description: | Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| nucleic acid binding | 2.51683451033161 | bayes_pls_golite062009 |
| DNA binding | 2.12258000781149 | bayes_pls_golite062009 |
| transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
| pyrophosphatase activity | 1.49611313354225 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.2155186842031 | bayes_pls_golite062009 |
| helicase activity | 1.16085745407703 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| transcription factor activity | 0.887108427603557 | bayes_pls_golite062009 |
| DNA helicase activity | 0.72881469450553 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.59513742813869 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.59513742813869 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.249173645231486 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.243902356228423 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.22150712609541 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.0781650226500197 | bayes_pls_golite062009 |
