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View Structure Prediction Details

Protein: CE30606
Organism: Caenorhabditis elegans
Length: 690 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30606.

Description E-value Query
Range
Subject
Range
gi|110766188 - gi|110766188|ref|XP_624270.2| PREDICTED: similar to brahma CG5942-PA, isoform A, partial [Apis melli...
409.0 [0..6] [689..822]

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Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLTDEQRQA IAKKREEAIR RAAAYREREM QAAANATAST SSAAPPAPPK PVIPVMFSQN  60
   61 RQNFQPMKPT MNNSTKQSTI NNYIKQVQKP EPTSLIKPTI GVKLKLDIGD RIKIEFYPFH 120
  121 SAVIDLIKQV PSRNY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [136-690]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPAKRSWTVA SSDHITISNI LKNATAVKVE LEPLPQNIIG LTNFKPKAAP SDLNTVMDPS  60
   61 LIERLFPYQK EGVIFALERD GRILLADEMG LGKSVQALTI ARYYKADWPL LIVCPASVKG 120
  121 AWKKQLNTFF PIIHRIFIVD KSSDPLPDVC TSNTVAIMSY EQMVLKHDIL KKEKYRTIIF 180
  181 DESHMLKDGK ARRTKVATDL SKVALHVILL SGTPALSRPS ELFTQIRLID HKLFTNFHEF 240
  241 AIRYCDGKQG RFCFEAKGCT NSEELAAIMF KRLMIRRLKA DVLKDLPEKR REVVYVSGPT 300
  301 IDARMDDLQK ARADYEKVNS MERKHESLLE FYSLTGIVKA AAVCEHILEN YFYPDAPPRK 360
  361 VLIFAHHQIV LDTIQVEVNK RKLGSIRIDG KTPSHRRTAL CDSFQTDDNI RVAVLSITAA 420
  421 GVGITLTAAS VVVFAEIHFN PGYLVQAEDR AHRVGQKDSV FVQYLIAKKT ADDVMWNMVQ 480
  481 QKLDVLGQVS LSSDTFRTAD KMHLRFNDAA QPGIAEYLKK TPDTTIDEWE DPVEEKEDDD 540
  541 LEIICDSPAP KRIKN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.39794
Match: 1z3iX
Description: Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.64537357529343 bayes_pls_golite062009
nucleic acid binding 2.51683451033161 bayes_pls_golite062009
DNA binding 2.12258000781149 bayes_pls_golite062009
transcription regulator activity 2.09345198747025 bayes_pls_golite062009
pyrophosphatase activity 1.49611313354225 bayes_pls_golite062009
DNA-dependent ATPase activity 1.2155186842031 bayes_pls_golite062009
helicase activity 1.16085745407703 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
transcription factor activity 0.887108427603557 bayes_pls_golite062009
DNA helicase activity 0.72881469450553 bayes_pls_golite062009
purine NTP-dependent helicase activity 0.59513742813869 bayes_pls_golite062009
ATP-dependent helicase activity 0.59513742813869 bayes_pls_golite062009
structure-specific DNA binding 0.249173645231486 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.243902356228423 bayes_pls_golite062009
ATP-dependent DNA helicase activity 0.22150712609541 bayes_pls_golite062009
protein binding 0.170837278876362 bayes_pls_golite062009
nucleotide binding 0.114848452385726 bayes_pls_golite062009
purine nucleotide binding 0.10713474095071 bayes_pls_golite062009
purine ribonucleotide binding 0.0916519414118148 bayes_pls_golite062009
ribonucleotide binding 0.0915913646217636 bayes_pls_golite062009
double-stranded DNA binding 0.0781650226500197 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle