Protein: | CE30606 |
Organism: | Caenorhabditis elegans |
Length: | 690 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30606.
Description | E-value | Query Range |
Subject Range |
|
409.0 | [0..6] | [689..822] |
Region A: Residues: [1-135] |
1 11 21 31 41 51 | | | | | | 1 MVLTDEQRQA IAKKREEAIR RAAAYREREM QAAANATAST SSAAPPAPPK PVIPVMFSQN 60 61 RQNFQPMKPT MNNSTKQSTI NNYIKQVQKP EPTSLIKPTI GVKLKLDIGD RIKIEFYPFH 120 121 SAVIDLIKQV PSRNY |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [136-690] |
1 11 21 31 41 51 | | | | | | 1 DPAKRSWTVA SSDHITISNI LKNATAVKVE LEPLPQNIIG LTNFKPKAAP SDLNTVMDPS 60 61 LIERLFPYQK EGVIFALERD GRILLADEMG LGKSVQALTI ARYYKADWPL LIVCPASVKG 120 121 AWKKQLNTFF PIIHRIFIVD KSSDPLPDVC TSNTVAIMSY EQMVLKHDIL KKEKYRTIIF 180 181 DESHMLKDGK ARRTKVATDL SKVALHVILL SGTPALSRPS ELFTQIRLID HKLFTNFHEF 240 241 AIRYCDGKQG RFCFEAKGCT NSEELAAIMF KRLMIRRLKA DVLKDLPEKR REVVYVSGPT 300 301 IDARMDDLQK ARADYEKVNS MERKHESLLE FYSLTGIVKA AAVCEHILEN YFYPDAPPRK 360 361 VLIFAHHQIV LDTIQVEVNK RKLGSIRIDG KTPSHRRTAL CDSFQTDDNI RVAVLSITAA 420 421 GVGITLTAAS VVVFAEIHFN PGYLVQAEDR AHRVGQKDSV FVQYLIAKKT ADDVMWNMVQ 480 481 QKLDVLGQVS LSSDTFRTAD KMHLRFNDAA QPGIAEYLKK TPDTTIDEWE DPVEEKEDDD 540 541 LEIICDSPAP KRIKN |
Detection Method: | |
Confidence: | 74.39794 |
Match: | 1z3iX |
Description: | Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 2.64537357529343 | bayes_pls_golite062009 |
nucleic acid binding | 2.51683451033161 | bayes_pls_golite062009 |
DNA binding | 2.12258000781149 | bayes_pls_golite062009 |
transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
pyrophosphatase activity | 1.49611313354225 | bayes_pls_golite062009 |
DNA-dependent ATPase activity | 1.2155186842031 | bayes_pls_golite062009 |
helicase activity | 1.16085745407703 | bayes_pls_golite062009 |
catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
transcription factor activity | 0.887108427603557 | bayes_pls_golite062009 |
DNA helicase activity | 0.72881469450553 | bayes_pls_golite062009 |
purine NTP-dependent helicase activity | 0.59513742813869 | bayes_pls_golite062009 |
ATP-dependent helicase activity | 0.59513742813869 | bayes_pls_golite062009 |
structure-specific DNA binding | 0.249173645231486 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 0.243902356228423 | bayes_pls_golite062009 |
ATP-dependent DNA helicase activity | 0.22150712609541 | bayes_pls_golite062009 |
protein binding | 0.170837278876362 | bayes_pls_golite062009 |
nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
double-stranded DNA binding | 0.0781650226500197 | bayes_pls_golite062009 |