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Protein Overview: pmp-4

General Information:
Name(s) found: pmp-4 / CE16325 [WormBase]
Description(s) found:
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  • WBGene00004061 locus:pmp-4 status:Partially_confirmed UniProt:O45730 protein_id:CAB05909.1 [WormBase]
  • pir||T24357 hypothetical protein T02D1.5 - Caenorhabditis elegans [NCBI NR]
  • gi|3879319|emb|CAB05909.1| C. elegans protein T02D1.5, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17542146|ref|NP_503105.1| Peroxisomal Membrane Protein related family member (pmp-4) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE16325 WBGene00004061 locus:pmp-4 ABC transporters status:Partially_confirmed TR:O45730 protein_id:CAB05909.1 [wormpep150.fasta]
  • 16325 WBGene00004061 locus:pmp-4 ABC transporters status:Partially_confirmed TR:O45730 protein_id:CAB05909.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • ATP-binding cassette sub-family D member like (83.1 kD) (4S346) [Caenorhabditis elegans]gi|3879319|emb|CAB05909.1| Hypothetical protein T02D1.5 [Caenorhabditis elegans]gi|7506941|pir||T24357 hypothetical protein T02D1.5 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • ABC transporters status:Partially_confirmed TR:O45730 protein_id:CAB05909.1 [wormpep115.fasta.reversed]
  • CE16325 ABC transporters status:Partially_confirmed TR:O45730 protein_id:CAB05909.1 [wormpep80.hongbin]
  • CE16325 WBGene00004061 locus:pmp-4 ABC transporters status:Partially_confirmed UniProt:O45730_CAEEL protein_id:CAB05909.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE16325 WBGene00004061 locus:pmp-4 ABC transporters status:Partially_confirmed UniProt:O45730_CAEEL protein_id:CAB05909.1| [wormORF-contam.fasta]
  • Peroxisomal Membrane Protein related family member (pmp-4) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein T02D1.5 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE16325 WBGene00004061 locus:pmp-4 ABC transporters status:Partially_confirmed UniProt:O45730 protein_id:CAB05909.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE16325 WBGene00004061 locus:pmp-4 status:Partially_confirmed UniProt:O45730 protein_id:CAB05909.1 [wormpep246-ecoli-contam.fasta]
  • Peroxisomal Membrane Protein related OS=Caenorhabditis elegans GN=pmp-4 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 734 amino acids

    Gene Ontology:
    Cellular Component: Gram-negative-bacterium-type cell wall [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    outer membrane-bounded periplasmic space [IEALink to PubMed article]
    Biological Process: cell division [IEALink to PubMed article]
    cobalt ion transport [IEALink to PubMed article]
    protein transport [IEALink to PubMed article]
    nitrate transport [IEALink to PubMed article]
    phosphonate transport [IEALink to PubMed article]
    polyamine transport [IEALink to PubMed article]
    cytochrome complex assembly [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: ATPase activity [IEALink to PubMed article]
    nucleotide binding [IEALink to PubMed article]
    ATP binding [IEALink to PubMed article]
    ATPase activity, coupled to transmembrane movement of substances [IEALink to PubMed article]
    nitrate transmembrane transporter activity [IEALink to PubMed article]
    nucleoside-triphosphatase activity [IEALink to PubMed article]
    protein transporter activity [IEALink to PubMed article]
    cysteine-type peptidase activity [IEALink to PubMed article]
    polyamine-transporting ATPase activity [IEALink to PubMed article]
    phosphonate transmembrane-transporting ATPase activity [IEALink to PubMed article]
    toxin transporter activity [IEALink to PubMed article]
    transporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVQSKFLET GIDPEKRKKA LLVGAAGVAA VAVAHWVSLR KSQKSHHKME KEDSVASDGT  60
   61 PKKNKKKAFD PQFLKQLKEL LKIMIPGVFS KEAGIIGMHS IILICRTFLT IFVAQLEGSM 120
  121 VQAIVEKNVL QFVLHLVKWI LVALPATFVN SMIRFFESYL GLAFRTRLTK HAYKQYFSDQ 180
  181 TYYAVSNLDT RLQNADQCLT EDITMFSQSV AHLYSHLTKP VLDVALITFT LIKLAIQRGT 240
  241 GRSTFLPSCM AIMAVSLTAK ILRAVSPRFG HMVAEEARRK GHLRYLHSRI ITNSEEIAFY 300
  301 GGHQAEYKQL DGAFNSLYQQ MMLIFKKRIP YIMIEQFLMK YVWSGTGMVM IALPILATEY 360
  361 ADDEKSTKLE DLPDRGVSER TRGYATAKTL LFNSADAVER LMTSYKEVTE LAGYTGRVHE 420
  421 MFQVFDDAKK GIYQRQTVSA GAEQGQRGER FDTSKIEGII TDSEADEIIL NSVPIVTPNG 480
  481 DVVVKNMTLT ISPGMHVLIT GPNGCGKSSL FRILGGLWPV YRGHLEKPTS DRMYYIPQRP 540
  541 YMTLGTLRDQ VIYPDTTIQM RRQGITDQDL MTMLRIVHLE HIVEREGGWD AQNDWMDVLS 600
  601 GGEKQRMGMA RVFYHRPKYA LLDECTSAVS IDVEGSIYQA IKDSGITLLT VTHRPSLWKF 660
  661 HTHLLQYDGE GGYKVSSLNE KTIGERMSYS EEKQQLEKQL AEVPRWKERL EEVCQLLGGN 720
  721 EDHLNMTIDT DDSE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..68] FFAS03 1.01 Solution NMR Structure of the Membrane Protein Stannin
    2 View Details [69..734] PSI-BLAST 132.0 No description for 2hydA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • ATPase activity, coupled to transmembrane movement of substances
    		•  5.57844095962502 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  5.57813579764186 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  5.57813579764186 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  5.5689620139321 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  5.55992639965745 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  5.50005167063544 bayes_pls_golite062009
  • lipid transporter activity
    		•  5.43964691043504 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  4.98276715440477 bayes_pls_golite062009
  • ATPase activity
    		•  4.69795387297193 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  4.45923622153365 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  4.39781350157199 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  4.38133275795019 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  4.38085303582726 bayes_pls_golite062009
  • transporter activity
    		•  3.71239480053329 bayes_pls_golite062009
  • hydrolase activity
    		•  3.14498892233323 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.13960906549884 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.1318898376276 bayes_pls_golite062009
  • ATP binding
    		•  3.01346604299372 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  2.96271391116269 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  2.91131545957759 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  2.70262534541085 bayes_pls_golite062009
  • ribonucleotide binding
    		•  2.70178191749524 bayes_pls_golite062009
  • purine nucleotide binding
    		•  2.6583477492092 bayes_pls_golite062009
  • nucleotide binding
    		•  2.62374702628143 bayes_pls_golite062009
  • binding
    		•  1.69327117652379 bayes_pls_golite062009
  • peptide-transporting ATPase activity
    		•  1.37783759788533 bayes_pls_golite062009
  • peptide transporter activity
    		•  1.19353064661766 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.08692822631118 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.977237423302079 bayes_pls_golite062009
  • motor activity
    		•  0.87979065815418 bayes_pls_golite062009
  • GTPase activity
    		•  0.83849854735032 bayes_pls_golite062009
  • cholesterol transporter activity
    		•  0.644421039250979 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.557919489256916 bayes_pls_golite062009
  • sterol transporter activity
    		•  0.51525091036229 bayes_pls_golite062009
  • anion transmembrane-transporting ATPase activity
    		•  0.48775834126327 bayes_pls_golite062009
  • drug transmembrane transporter activity
    		•  0.38711726712063 bayes_pls_golite062009
  • protein binding
    		•  0.378225828131122 bayes_pls_golite062009
  • catalytic activity
    		•  0.368034275052766 bayes_pls_golite062009
  • fatty acid transporter activity
    		•  0.278494397068437 bayes_pls_golite062009
  • hydrogen ion transporting ATP synthase activity, rotational mechanism
    		•  0.213018989352421 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  0.123304946374679 bayes_pls_golite062009
  • microtubule motor activity
    		•  0.11674780318211 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  0.0775601177068852 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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