YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPCC11E10.06c

General Information:
Name(s) found: SPCC11E10.06c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
SHOW ALL
  • RNA polymerase II elongator complex subunit Elp4 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 361 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    Elongator holoenzyme complex [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: tRNA modification [ISSLink to PubMed article]
    regulation of transcription from RNA polymerase II promoter [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFKRKAAPQ IAPTNLPTGV RLSSKDARWI TSSGSSSFDY YLSGGIPMKS LLVIEEDSMD  60
   61 YASVLLKFFA AEGLKQDHVI WLGPSIGEMW FRQLPGDSDR PNKNENSAGE DNHSSPPSKN 120
  121 PQQERMKIAW RYEQVSKTKA PTLDMIPPGY THSFDLSKNL IVKSDMKYAV SPFPLETGSN 180
  181 PYAPVIESLT RFLSTLTPGT VCRLVLPSIL SPAFYSIRAT HPQHFIRFIH TLSSLIKCTT 240
  241 SVHLICMCSV PSTLFSRDCE QIFWLENLAS AVFSLHPFPV KETVNGLVTQ PLGLFRIHKL 300
  301 PLALPFTNHA NSNEAGDLSF TVSKRRFTIE PWVLPPLDDE QKDTKISNTN PQKQPVKSLD 360
  361 F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..361] FFAS03 2.44 Crystal Structure of E. Coli RecA in a Compressed Helical Filament Form 2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.5815673740955 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.48860356580237 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.12472659433935 bayes_pls_golite062009
  • DNA binding
    		•  2.11486163652443 bayes_pls_golite062009
  • transcription elongation regulator activity
    		•  1.56306087415192 bayes_pls_golite062009
  • RNA helicase activity
    		•  1.19425264627559 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  1.16223608981327 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  1.13639104386803 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.08918917705764 bayes_pls_golite062009
  • catalytic activity
    		•  0.942640875796745 bayes_pls_golite062009
  • transcription factor activity
    		•  0.927390204819289 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.705468778269 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.705456248830618 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.705065805101611 bayes_pls_golite062009
  • nucleotide binding
    		•  0.703706150277311 bayes_pls_golite062009
  • ligase activity
    		•  0.468089018031004 bayes_pls_golite062009
  • ATP binding
    		•  0.415620843081737 bayes_pls_golite062009
    		• 0.405794734125803 bayes_pls_golite062009
  • helicase activity
    		•  0.389068221426991 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.386099202393762 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.370839153472157 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.283324779613939 bayes_pls_golite062009
  • protein binding
    		•  0.201869978778282 bayes_pls_golite062009
  • kinase activity
    		•  0.159204263388718 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.0655945570748848 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.0655945570748848 bayes_pls_golite062009
  • RNA binding
    		•  0.06085524991456 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.80

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle