| Protein: | SPCC11E10.06c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 361 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC11E10.06c.
| Description | E-value | Query Range |
Subject Range |
|
|
399.0 | [0..2] | [340..28] |
|
|
393.0 | [0..2] | [355..28] |
|
|
389.0 | [0..2] | [340..28] |
|
|
389.0 | [0..2] | [340..28] |
|
|
379.0 | [0..2] | [340..32] |
|
|
377.0 | [0..2] | [340..28] |
|
Region A: Residues: [1-361] |
1 11 21 31 41 51
| | | | | |
1 MSFKRKAAPQ IAPTNLPTGV RLSSKDARWI TSSGSSSFDY YLSGGIPMKS LLVIEEDSMD 60
61 YASVLLKFFA AEGLKQDHVI WLGPSIGEMW FRQLPGDSDR PNKNENSAGE DNHSSPPSKN 120
121 PQQERMKIAW RYEQVSKTKA PTLDMIPPGY THSFDLSKNL IVKSDMKYAV SPFPLETGSN 180
181 PYAPVIESLT RFLSTLTPGT VCRLVLPSIL SPAFYSIRAT HPQHFIRFIH TLSSLIKCTT 240
241 SVHLICMCSV PSTLFSRDCE QIFWLENLAS AVFSLHPFPV KETVNGLVTQ PLGLFRIHKL 300
301 PLALPFTNHA NSNEAGDLSF TVSKRRFTIE PWVLPPLDDE QKDTKISNTN PQKQPVKSLD 360
361 F
|
| Detection Method: |  |
| Confidence: | 2.44 |
| Match: | 1u94A |
| Description: | Crystal Structure of E. Coli RecA in a Compressed Helical Filament Form 2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.5815673740955 | bayes_pls_golite062009 |
| nucleic acid binding | 2.48860356580237 | bayes_pls_golite062009 |
| transcription regulator activity | 2.12472659433935 | bayes_pls_golite062009 |
| DNA binding | 2.11486163652443 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.56306087415192 | bayes_pls_golite062009 |
| RNA helicase activity | 1.19425264627559 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 1.16223608981327 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 1.13639104386803 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.08918917705764 | bayes_pls_golite062009 |
| catalytic activity | 0.942640875796745 | bayes_pls_golite062009 |
| transcription factor activity | 0.927390204819289 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.705468778269 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.705456248830618 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.705065805101611 | bayes_pls_golite062009 |
| nucleotide binding | 0.703706150277311 | bayes_pls_golite062009 |
| ligase activity | 0.468089018031004 | bayes_pls_golite062009 |
| ATP binding | 0.415620843081737 | bayes_pls_golite062009 |
| 0.405794734125803 | bayes_pls_golite062009 | |
| helicase activity | 0.389068221426991 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.386099202393762 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.370839153472157 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.283324779613939 | bayes_pls_golite062009 |
| protein binding | 0.201869978778282 | bayes_pls_golite062009 |
| kinase activity | 0.159204263388718 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.0655945570748848 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.0655945570748848 | bayes_pls_golite062009 |
| RNA binding | 0.06085524991456 | bayes_pls_golite062009 |
