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Protein Overview: SPAP8A3.05

General Information:
Name(s) found: SPAP8A3.05 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • ski complex subunit Ski7 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 695 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    exosome (RNase complex) [ISS]
    Biological Process: mRNA catabolic process [ISSLink to PubMed article]
    Molecular Function: GTP binding [ISSLink to PubMed article]
    GTPase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLSQLLNS KKAKQKPPSE HPIGLSSILK QDSSSSSDSP NFFPSSSTND HQERDTINDT  60
   61 NFVVPEKQKT SKLALLAAER KKLHSSFPST QQQPPKTEKE KEKEPIQAKH KKNVENDFLL 120
  121 QRFRKVRIAE KKDSEQPSSH EIHLTDDDDK TTLQKQMVES DQLKKNPQEV KLAPPSSFAK 180
  181 CLTGAKKRVF EDQIEIHLSK SSLLGFNAPS PDDIVLMAQS KSKSFQKHKR LDEQLLNSVK 240
  241 SMKKVSQQLK PQKNTNDSNN DHTLLSQDQL IELSKLVKPR TKLLLLGPPK SGKKTLLSRL 300
  301 FFQIGSFDPK TMQKCTVLNA KKESLSSVLK STKTKWYDFE TFSNSYSSTI IDFPLGIFTT 360
  361 NASSRDNFLK HSSLFQVMNT AIFTIDCLNP LEGLDGISSI LQLMNGLSIS SYMFAITKMD 420
  421 EIEWDENKFI NLVNSIQSFL KESCGIIEKS KFIPISGLKG TNLTSISQEK LSQWYKSDTL 480
  481 LGKIDKEADT NHGTWNFLLN LPLSLTISHI TPLPENQSHI YCSIHSGMLQ DSQKLYVGTG 540
  541 RLETQITGLS SDENPKGFNV AGDMIQAKIP TLPNLCPGIL IADSIDAFTS SKTAYVNATW 600
  601 FHGSLEKGKS MHVIALFGCH AVLTKLYCFT DSQEKAPNAI GNDLERNRTS LVKIELENAF 660
  661 PLVKESYINT LSRVLFVSEK WNSLIAFGTV LSLHD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..267] PSI-BLAST 5.0 Heavy meromyosin subfragment
    2 View Details [268..695] PSI-BLAST 133.0 Elongation factor eEF-1alpha, domain 2; Elongation factor eEF-1alpha, C-terminal domain; Elongation factor eEF-1alpha, N-terminal (G) domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • ribonuclease activity
    		•  4.3040603813219 bayes_pls_golite062009
  • hydrolase activity
    		•  2.55157966585974 bayes_pls_golite062009
  • binding
    		•  2.05253348982328 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.60768715809391 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  1.44266227866728 bayes_pls_golite062009
  • exonuclease activity
    		•  1.15670533472751 bayes_pls_golite062009
  • DNA binding
    		•  1.11699929651302 bayes_pls_golite062009
  • nuclease activity
    		•  1.06224744208356 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.989226939888218 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.759324158861044 bayes_pls_golite062009
  • RNA binding
    		•  0.715902454627085 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.546796591575762 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.543610140926125 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.540750418412449 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.517457589081898 bayes_pls_golite062009
    		• 0.3172470686972 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009
  • helicase activity
    		•  0.0775311459068899 bayes_pls_golite062009
  • transcription factor activity
    		•  0.0434163635422169 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle