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Protein Overview: SPAC343.15

General Information:
Name(s) found: SPAC343.15 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • tRNA isopentenyltransferase [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 434 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISSLink to PubMed article]
    mitochondrion [ISSLink to PubMed article]
    cytosol [ISSLink to PubMed article]
    Biological Process: tRNA modification [ISSLink to PubMed article]
    Molecular Function: ATP binding [ISSLink to PubMed article]
    zinc ion binding [IEA]
    tRNA isopentenyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKPLCVVIG TTGAGKSDLA VQLAKRFGSQ VINADSMQIY RGFDTITNKI TVEEQENVHH  60
   61 RLMSFLNFDK EYSVPEFERD ASRVIDEIHS QGKIPIVVGG THYYLQSLLF EDTTLSAIDK 120
  121 LTNDSSPSKP PHPDSHILDD DPSAMLSYLK KIDPVMAEQW HPRDTRKIRR SLEIYFHTGR 180
  181 PPSEIYSEQK MKSSGSKLRY KSLIFWAFAD SLVLMPRLDK RVDKMLSHGL VDEIKSMKSL 240
  241 AESEKFSPDF TRGIWQCIGF KEFMPWFEAP SDIVFNDCLE RMKVSTRQYA KSQKKWIQSR 300
  301 FLPMCLAQQD LSPSSILFST TNTTDLNNWE EQVEKACRVF QYFFYNGDAI APSADDQHAF 360
  361 EKARDYLSIM NGRQSQKKKF VCEECLDKRG DPFTVIGEDA FNVHIKSRKH KTTVRRKKER 420
  421 AERQIRLKNI GILK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..324] PSI-BLAST 110.0 No description for 2qgnA was found.
    2 View Details [325..434] FFAS03 1.9 Solution Structure of a Human C2H2-type Zinc Finger Protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  3.37529385176635 bayes_pls_golite062009
  • DNA binding
    		•  3.3049326844117 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.24981360535232 bayes_pls_golite062009
  • transcription factor activity
    		•  2.44389510173662 bayes_pls_golite062009
  • binding
    		•  2.40458515823407 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.57041104288348 bayes_pls_golite062009
  • transcription activator activity
    		•  1.20323819132961 bayes_pls_golite062009
  • protein binding
    		•  0.936302453256998 bayes_pls_golite062009
  • RNA binding
    		•  0.84315767580466 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.732558534458316 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.686318575498149 bayes_pls_golite062009
  • chromatin binding
    		•  0.626365497850853 bayes_pls_golite062009
  • transcription factor binding
    		•  0.515821187939278 bayes_pls_golite062009
  • catalytic activity
    		•  0.263007611601737 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.200483461579207 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.113925660147477 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.0855506955761403 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle