YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: kap113

General Information:
Name(s) found: kap113 / SPCC1322.06 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
SHOW ALL
  • karyopherin Kap113 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 983 amino acids

    Gene Ontology:
    Cellular Component: nuclear envelope [IDALink to PubMed article]
    nucleus [IDALink to PubMed article][TASLink to PubMed article]
    nuclear pore [TASLink to PubMed article]
    Biological Process: mRNA export from nucleus [IMPLink to PubMed article]
    mitotic cell cycle spindle assembly checkpoint [IMPLink to PubMed article]
    protein targeting [RCALink to PubMed article]
    intracellular protein transport [IEA]
    Molecular Function: protein transporter activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVDPVVYQL QRAVSQDPIA VKDAEGHLNN WKKEPGFFGK LYSIFLDKQN DMSLRWIAII  60
   61 QLRNSIDIIW RKNTKMSLLP EERDFIRCNA LLGSIKSENL LSIQNALVVS RIARLDYPTE 120
  121 WPSLFHDLLG KLQQSLGTGD YDVALRLLIT LHHIIKAMAG NRLLRSRQIF YKLAPELLTI 180
  181 LQPILHSSLS SWMMILESSK EIKDSTLLSY MQISRYTLKA CRRLVVFGFQ NPSESEFSER 240
  241 MLAFCAVHQR KLLSMLGTML QSSRSPIVVG ECLEMAFAHA FLFNKPFFDF SFYSPCLTKF 300
  301 PATIDYISLH YDFLGQISSH LSSYKEKFEE SSKNFEKLVI MSLRVFILVI QEFCNTKSSH 360
  361 PETAQVLYNS FLVDNRINNL LDLLITKLLI LKEEDFEEWT DSPQQWVLEQ STQDVEFNVR 420
  421 PCAEKLLKCF FDAYGDIIVS PFKDMIYSVF ECPKTLTQAV QQDTLISSFG VGYTQLKSIF 480
  481 PFAKWLQEAA VPNMASINDI GISRVYRRRI AIFLSQWIED SSSEQLLEVI YKLYCSFLNL 540
  541 TDPCNDAVVI LTTIDAFKTV LDDWNFSENS FLSIKENLFV HVLSLFKAFE SVDARTSILS 600
  601 LLGTLLARAG EHVAPMESTI ASLLSQLWDG WKKEPLLRAR VLAVMHQFVN AIKAKSFEFS 660
  661 TFLYTVIEYC VNPESPEHVI FEADAMELWS TFLMYIQKLP ETFTLLIPHL LYHLSQATST 720
  721 LPFVLMIVSS YQLLDNTVLM KDYSFTIFEK LNDLLDDVKN ETLQALCKTV CLLIETTPMD 780
  781 MIYESLLNSS LLSRLLLSIA TNDKHPQVLI EYLLVVSRIS LREPELILKV CQTKNINIAM 840
  841 LIGNWILLND HINHSKDRKL NTLALSSLLR TNHPDVLAVL DSIMNLWFSV LSEVEEDANG 900
  901 DATIYYKNDD YSAVGFYLDE TSEEMTRRKQ LLLKDPVHSV NSRSFFISVF MFCRDANGGM 960
  961 ENFQNQYLST VNPALLEQFQ SML

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..899] PSI-BLAST 94.0 Karyopherin beta2
    2 View Details [900..983] MSA 1.133997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein transporter activity
    		•  4.58709163830613 bayes_pls_golite062009
  • binding
    		•  3.0667965351474 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  2.74547353635661 bayes_pls_golite062009
  • transporter activity
    		•  2.48700774379895 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.26725422172281 bayes_pls_golite062009
  • nuclear export signal receptor activity
    		•  2.13470398426489 bayes_pls_golite062009
  • RNA binding
    		•  1.91507786651888 bayes_pls_golite062009
  • nuclear localization sequence binding
    		•  1.91487015967262 bayes_pls_golite062009
  • protein binding
    		•  1.73688475473996 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.28481004323799 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.09652988954158 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.00841167631924 bayes_pls_golite062009
  • signal sequence binding
    		•  0.84634722220211 bayes_pls_golite062009
  • signal transducer activity
    		•  0.662662274021266 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.662662274021266 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.385452858197632 bayes_pls_golite062009
  • mRNA binding
    		•  0.37278269424461 bayes_pls_golite062009
  • DNA binding
    		•  0.309260217284589 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.252495966234234 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.248585912061178 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.226380819487924 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.217517113570989 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  0.178770060806735 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  0.175241020572885 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  0.174922130116569 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.100181463251306 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.0635404099346928 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0548082069333885 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.052195223119721 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.0405268469927988 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle