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Protein Overview: rhp26

General Information:
Name(s) found: rhp26 / SPCP25A2.02c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • SNF2 family helicase Rhp26 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 973 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: transcription-coupled nucleotide-excision repair [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: ATP binding [ISSLink to PubMed article]
    DNA binding [IEA]
    DNA-dependent ATPase activity [ISSLink to PubMed article]
    ATP-dependent DNA helicase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVNEDLSHL GVFSVDQENL ERDVTNTASE YIAHESREIE KKRLQKVRKE ISSVKEKIRR  60
   61 LDERIDSRLT KISVKENFRK QLSKFRDTLQ SLQSDENDIK RRLNNEDSAN APGIGAFSTE 120
  121 ELERQELIRT GKVTPFRNLS GLQKEVDFDD ESSIREAVIK SEGTYYETAP HLSSEPSNID 180
  181 HGIIPRDEKD EYVTVDAVTE KVVTAAIDDG DDLVYRQRLN AWCANRKELR DQASASENNK 240
  241 DRGEFEGKDE WLLPHPSKKG QTFEGGFTIP GDIRPHLFRY QVTCVQWLWE LYCQEAGGII 300
  301 GDEMGLGKTI QIVSFLSSLH HSGKFQKPAL IVCPATLMKQ WVNEFHTWWA PLRVVVLHAT 360
  361 GSGQRASREK RQYESDASES EAEESKTSIK LRGASSSFHR YAKNLVESVF TRGHILITTY 420
  421 AGLRIYGDLI LPREWGYCVL DEGHKIRNPD SEISISCKQI RTVNRIILSG TPIQNNLTEL 480
  481 WNLFDFVFPG RLGTLPVFQN QFALPINIGG YANASNVQVQ TAYKCACMLR DLISPYLLRR 540
  541 MKLDVAADLP KKSEQVLFCK LTPLQRKAYQ DFLQGSDMQK ILNGKRQMLY GIDILRKICN 600
  601 HPDLVTREYL LHKEDYNYGD PEKSGKLKVI RALLTLWKKQ GHRTLLFSQT RQMLDILEIG 660
  661 LKDLPDVHYC RMDGSTSIAL RQDLVDNFNK NEYFDVFLLT TRVGGLGVNL TGADRVILFD 720
  721 PDWNPSTDAQ ARERAWRLGQ KKDVVVYRLM TAGTIEEKIY HRQIFKQFLT NKILKDPKQR 780
  781 RFFKMTDLHD LFTLGDNKTE GTETGSMFLG SERVLRKDNS SRNGNEAEDI PARDRKKHKI 840
  841 HDKGKKVNSS KVFEKMGIAS MEKYKPPQES NVTKTNSDST LGDDSVLDDI FASAGIQSTL 900
  901 KHDDIMEASQ TESILVEKEA TRVANEALRA VSSFRRPPRQ LIPPQQSTNV PGTSKPSGPI 960
  961 TSSTLLARLK QRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run dam1 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..259] FFAS03 1.43 Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
    2 View Details [260..823] PSI-BLAST 87.0 Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54
    3 View Details [824..973] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.64537357529343 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.11222585187695 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  2.02893949194171 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.97909493766908 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.95844964816653 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.95658009428828 bayes_pls_golite062009
  • DNA binding
    		•  1.7904783386531 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.68903321260301 bayes_pls_golite062009
  • ATPase activity
    		•  1.42257610975945 bayes_pls_golite062009
  • protein binding
    		•  1.22129154759482 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.2155186842031 bayes_pls_golite062009
  • helicase activity
    		•  1.16085745407703 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • hydrolase activity
    		•  0.98565595572967 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  0.732723553251109 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.72881469450553 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.725611289205392 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.720649395550746 bayes_pls_golite062009
  • nucleotide binding
    		•  0.717697610309727 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.713814218071151 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.713752628021599 bayes_pls_golite062009
  • transcription factor activity
    		•  0.603758349693077 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.59513742813869 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.59513742813869 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.58862275163252 bayes_pls_golite062009
  • transcription activator activity
    		•  0.537911793669378 bayes_pls_golite062009
  • GTPase activity
    		•  0.437665353870877 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.396187998943318 bayes_pls_golite062009
  • microtubule motor activity
    		•  0.38363601832205 bayes_pls_golite062009
  • translation regulator activity
    		•  0.29096092258568 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.274994961137851 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.22150712609541 bayes_pls_golite062009
  • ATP binding
    		•  0.19169045543599 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.165732470448462 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.162060759063149 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.144154288308693 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.114463153989353 bayes_pls_golite062009
  • motor activity
    		•  0.0492172159259601 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle