| Protein: | rhp26 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 973 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rhp26.
| Description | E-value | Query Range |
Subject Range |
|
|
469.0 | [0..3] | [957..705] |
|
|
468.0 | [0..3] | [957..696] |
|
|
462.0 | [0..3] | [957..695] |
|
|
462.0 | [0..29] | [957..41] |
|
|
461.0 | [0..3] | [957..750] |
|
|
460.0 | [0..9] | [957..717] |
|
|
460.0 | [0..3] | [957..706] |
|
Region A: Residues: [1-259] |
1 11 21 31 41 51
| | | | | |
1 MSVNEDLSHL GVFSVDQENL ERDVTNTASE YIAHESREIE KKRLQKVRKE ISSVKEKIRR 60
61 LDERIDSRLT KISVKENFRK QLSKFRDTLQ SLQSDENDIK RRLNNEDSAN APGIGAFSTE 120
121 ELERQELIRT GKVTPFRNLS GLQKEVDFDD ESSIREAVIK SEGTYYETAP HLSSEPSNID 180
181 HGIIPRDEKD EYVTVDAVTE KVVTAAIDDG DDLVYRQRLN AWCANRKELR DQASASENNK 240
241 DRGEFEGKDE WLLPHPSKK
|
| Detection Method: |  |
| Confidence: | 1.43 |
| Match: | 1jchA |
| Description: | Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [260-823] |
1 11 21 31 41 51
| | | | | |
1 GQTFEGGFTI PGDIRPHLFR YQVTCVQWLW ELYCQEAGGI IGDEMGLGKT IQIVSFLSSL 60
61 HHSGKFQKPA LIVCPATLMK QWVNEFHTWW APLRVVVLHA TGSGQRASRE KRQYESDASE 120
121 SEAEESKTSI KLRGASSSFH RYAKNLVESV FTRGHILITT YAGLRIYGDL ILPREWGYCV 180
181 LDEGHKIRNP DSEISISCKQ IRTVNRIILS GTPIQNNLTE LWNLFDFVFP GRLGTLPVFQ 240
241 NQFALPINIG GYANASNVQV QTAYKCACML RDLISPYLLR RMKLDVAADL PKKSEQVLFC 300
301 KLTPLQRKAY QDFLQGSDMQ KILNGKRQML YGIDILRKIC NHPDLVTREY LLHKEDYNYG 360
361 DPEKSGKLKV IRALLTLWKK QGHRTLLFSQ TRQMLDILEI GLKDLPDVHY CRMDGSTSIA 420
421 LRQDLVDNFN KNEYFDVFLL TTRVGGLGVN LTGADRVILF DPDWNPSTDA QARERAWRLG 480
481 QKKDVVVYRL MTAGTIEEKI YHRQIFKQFL TNKILKDPKQ RRFFKMTDLH DLFTLGDNKT 540
541 EGTETGSMFL GSERVLRKDN SSRN
|
| Detection Method: | |
| Confidence: | 87.0 |
| Match: | 1z3iX |
| Description: | Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| nucleic acid binding | 2.11222585187695 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 2.02893949194171 | bayes_pls_golite062009 |
| pyrophosphatase activity | 1.97909493766908 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 1.95844964816653 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 1.95658009428828 | bayes_pls_golite062009 |
| DNA binding | 1.7904783386531 | bayes_pls_golite062009 |
| transcription regulator activity | 1.68903321260301 | bayes_pls_golite062009 |
| ATPase activity | 1.42257610975945 | bayes_pls_golite062009 |
| protein binding | 1.22129154759482 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.2155186842031 | bayes_pls_golite062009 |
| helicase activity | 1.16085745407703 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| hydrolase activity | 0.98565595572967 | bayes_pls_golite062009 |
| ATPase activity, coupled | 0.732723553251109 | bayes_pls_golite062009 |
| DNA helicase activity | 0.72881469450553 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.725611289205392 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.720649395550746 | bayes_pls_golite062009 |
| nucleotide binding | 0.717697610309727 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.713814218071151 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.713752628021599 | bayes_pls_golite062009 |
| transcription factor activity | 0.603758349693077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.59513742813869 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.59513742813869 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.58862275163252 | bayes_pls_golite062009 |
| transcription activator activity | 0.537911793669378 | bayes_pls_golite062009 |
| GTPase activity | 0.437665353870877 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.396187998943318 | bayes_pls_golite062009 |
| microtubule motor activity | 0.38363601832205 | bayes_pls_golite062009 |
| translation regulator activity | 0.29096092258568 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.274994961137851 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.22150712609541 | bayes_pls_golite062009 |
| ATP binding | 0.19169045543599 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.165732470448462 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.162060759063149 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.144154288308693 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.114463153989353 | bayes_pls_golite062009 |
| motor activity | 0.0492172159259601 | bayes_pls_golite062009 |
|
Region A: Residues: [824-973] |
1 11 21 31 41 51
| | | | | |
1 GNEAEDIPAR DRKKHKIHDK GKKVNSSKVF EKMGIASMEK YKPPQESNVT KTNSDSTLGD 60
61 DSVLDDIFAS AGIQSTLKHD DIMEASQTES ILVEKEATRV ANEALRAVSS FRRPPRQLIP 120
121 PQQSTNVPGT SKPSGPITSS TLLARLKQRR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
