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Protein Overview: SPCC1682.13

General Information:
Name(s) found: SPCC1682.13 [Sanger Pombe]
Description(s) found:
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  • pir||T41070 conserved hypothetical protein SPCC1682.13 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582452|sp|O74443.1|YJED_SCHPO RecName: Full=SWIRM domain-containing protein C1682.13 [NCBI NR]
  • gi|3560167|emb|CAA20679.1| Clr6 associated factor 2, Laf2 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19075306|ref|NP_587806.1| SWIRM domain protein [Schizosaccharomyces pombe] [NCBI NR]
  • SWIRM domain protein [Sanger Pombe]
  • SWIRM domain-containing protein C1682.13 OS=Schizosaccharomyces pombe GN=SPCC1682.13 PE=1 SV=1 [Swiss-Prot]
  • CONSERVED PROTEIN: O74443; [pompepVF.fasta]
  • CONSERVED HYPOTHETICAL PROTEIN: O74443; [pompepV13]
  • Conserved hypothetical protein [pompep4896]
  • |||conserved protein [pompepnew.fasta]
  • SPCC1682.13 protein [4896.FASTAC]
  • |||SWIRM domain|Schizosaccharomyces pombe|chr 3|||Manual [pombe041504.fasta]
  • conserved hypothetical protein [Schizosaccharomyces pombe]gi|3560167|emb|CAA20679.1| SPCC1682.13 [Schizosaccharomyces pombe]gi|7490366|pir||T41070 conserved hypothetical protein SPCC1682.13 - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • (O74443) Conserved hypothetical protein [pompep4896_normal_reversed]
  • |laf2||Clr6 associated factor 2, Laf2|Schizosaccharomyces pombe|chr 3|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPCC1682.13 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPCC1682.13 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 272 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Rpd3L-Expanded complex [IDALink to PubMed article]
    Rpd3S complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [IPILink to PubMed article]
    positive regulation of transcription from RNA polymerase II promoter [ISSLink to PubMed article]
    histone deacetylation [IC]
    Molecular Function: DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQILKDQENL NPDGGSFVLI TPPLSPPKQK SLSYTNISRR HGMRACMKGI VYEVYKNQPK  60
   61 LWLQQELIWL RRKRIHPIPK ARRNNHVGRW ANRHSNVSSS SGSRGRSSVS SRDSSPSYSG 120
  121 ALRSAERSIS SSPSTIEARR RKSARGNGLN GAIDVANLPF EELPNFCPDM SVLDNRTHPR 180
  181 TLKAEWKGPP LDLSDDPYRD LLHPAELHLA STLRLPCLIY LDNKKRIFAE WHHRRQQGLT 240
  241 FRKTDAQRAS RVDVNKASRL WKAFHEVGFF DD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] deduced N/A No confident structure predictions are available.
    2 View Details [191..272] PSI-BLAST 25.221849 Structural and functional analysis of ada2 alpha swirm domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  5.13863038737912 bayes_pls_golite062009
  • DNA binding
    		•  4.66369707598026 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.51452285155271 bayes_pls_golite062009
  • transcription factor activity
    		•  4.06706589695599 bayes_pls_golite062009
  • protein deacetylase activity
    		•  3.96372663553041 bayes_pls_golite062009
  • histone deacetylase activity
    		•  3.87144180477793 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  3.5139760613123 bayes_pls_golite062009
  • deacetylase activity
    		•  3.25252407184239 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.16896789933192 bayes_pls_golite062009
  • transcription activator activity
    		•  3.10621734076555 bayes_pls_golite062009
  • binding
    		•  3.02779747447702 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
    		•  2.16849420369653 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.91962622287073 bayes_pls_golite062009
  • protein binding
    		•  1.88087411289001 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.73068440195944 bayes_pls_golite062009
  • chromatin binding
    		•  1.68956710349366 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.62096064323298 bayes_pls_golite062009
  • transcription factor binding
    		•  1.40653841901929 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  1.40149699217445 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  1.40149699217445 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.84983974758882 bayes_pls_golite062009
  • histone binding
    		•  0.557787598121402 bayes_pls_golite062009
  • telomeric DNA binding
    		•  0.284650049512347 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.2679415219517 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.25931464844298 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.236060274498333 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  0.212884313176726 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle