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Protein Overview: SPAC9G1.13c

General Information:
Name(s) found: SPAC9G1.13c [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
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  • histone acetyltransferase complex subunit Swc4 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 411 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSADIRDVF ELPPPEIGNK QKSKTPTERR PEGISRELYS LLGENSAPLA IYQKKFKEKP  60
   61 KVSHKAKNWV RQPFSISSRK DDFTLHHWVL KSEVDSEAYE DWNKDETDYL FRLCKDYDLR 120
  121 FFVIADRYDN EKYKKHRTLE DLKDRFYSVS RKILLARNPI NSMTAAQSSL LNTMEYNKEQ 180
  181 EVIRKKYLIG LASRTPEEVA EEEALFIELK RIETSQAKLL SDRDEVLRLL DEQKGDGGIH 240
  241 EYHTSAGMSS LIQDMINSQR TKNKVEEAIV SSSAPSSGVS SVLNTPTRPH ALSTPRIRYG 300
  301 PQPTDPQFGI TWHEKLHPGT FVRSQKIPAI KASLSQRVSS VMTELGVSSR LIMPTAKNFE 360
  361 KFVELQNSIV SLLELKRKVD RLSQETEIQD KLSRKRSASP DGSESKKHIS Q

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run spc19 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..170] FFAS03 1.01 CHICKEN B-MYB DNA BINDING DOMAIN, REPEAT 2 AND REPEAT3, NMR, 32 STRUCTURES
    2 View Details [171..233] MSA 1.039992 View MSA. No confident structure predictions are available.
    3 View Details [234..315] deduced N/A No confident structure predictions are available.
    4 View Details [316..411] MSA 2.029991 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • lysine N-acetyltransferase activity
    		•  5.78270240334849 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  5.78270240334849 bayes_pls_golite062009
  • transcription regulator activity
    		•  4.86538715425734 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  4.53404381270892 bayes_pls_golite062009
  • DNA binding
    		•  4.40186699787632 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  4.38345537045529 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.28652307290136 bayes_pls_golite062009
  • acetyltransferase activity
    		•  3.81897719505269 bayes_pls_golite062009
  • transcription factor activity
    		•  3.78935192723648 bayes_pls_golite062009
  • acyltransferase activity
    		•  3.35931919126926 bayes_pls_golite062009
  • transcription repressor activity
    		•  3.3280771187468 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  3.31384699789032 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  3.09869056563841 bayes_pls_golite062009
  • binding
    		•  2.92574888336072 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.15328641013602 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.00875399167309 bayes_pls_golite062009
  • transcription activator activity
    		•  1.5973137667873 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.5871271401402 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.30723796612579 bayes_pls_golite062009
  • transcription factor binding
    		•  1.24678737091956 bayes_pls_golite062009
  • protein deacetylase activity
    		•  1.23476914879396 bayes_pls_golite062009
  • histone deacetylase activity
    		•  1.18710646783152 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.865913662624162 bayes_pls_golite062009
  • chromatin binding
    		•  0.82130998265632 bayes_pls_golite062009
  • protein binding
    		•  0.795494287543952 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.691780246385357 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.658518317984762 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.559482273209868 bayes_pls_golite062009
  • deacetylase activity
    		•  0.534082291544628 bayes_pls_golite062009
  • histone binding
    		•  0.489784140732052 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.244471307852075 bayes_pls_golite062009
  • telomeric DNA binding
    		•  0.233668696331578 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.201150053959035 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.192832786095412 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.151335943405565 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.0110175210304684 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle