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Protein Overview: Tf2-11

General Information:
Name(s) found: Tf2-11 / SPBC1289.17 [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
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  • retrotransposable element [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1333 amino acids

    Gene Ontology:
    Cellular Component: nucleus [NASLink to PubMed article]
    Biological Process: proteolysis [IEA]
    DNA integration [IEA]
    RNA-dependent DNA replication [IEA]
    Molecular Function: DNA binding [IEA]
    RNA-directed DNA polymerase activity [IEA]
    RNA binding [IEA]
    aspartic-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYANYRYMK ARAKRWRPEN LDGIQTSDEH LINLFAKILS KHVPEIGKFD PNKDVESYIS  60
   61 KLDQHFTEYP SLFPNEHTKR QYTLNHLEEL EQQFAERMFS ENGSLTWQEL LRQPGKVQGS 120
  121 NKGDRLTKTF EGFRNQLDKV QFIRKLMSKA NVDDFHTRLF ILWMLPYSLR KLKERNYWKS 180
  181 EISEIYDFLE DKRTASYGKT HKRFQPQNKN LGKEFLPKKN NTTNSRNLRK TNISRIEYSS 240
  241 NKFLNHTRKR YEMVLQAELP DFKCSIPCLI DTGTQANIIT EETVRAHKLP TRPWSKSVIY 300
  301 GGVYPNKINR KTIKLNISLN GISIKTEFLV VKKFSHPAAI SFTTLYDNNI EISSSKHTLS 360
  361 QMNKVSNIVK EPELPDIYKE FKDITAETNT EKLPKPIKGL EFEVELTQEN YRLPIRNYPL 420
  421 PPGKMQAMND EINQGLKSGI IRESKAINAC PVMFVPKKEG TLRMVVDYKP LNKYVKPNIY 480
  481 PLPLIEQLLA KIQGSTIFTK LDLKSAYHLI RVRKGDEHKL AFRCPRGVFE YLVMPYGISI 540
  541 APAHFQYFIN TILGEVKESH VVCYMDNILI HSKSESEHVK HVKDVLQKLK NANLIINQAK 600
  601 CEFHQSQVKF IGYHISEKGF TPCQENIDKV LQWKQPKNRK ELRQFLGSVN YLRKFIPKTS 660
  661 QLTHPLNNLL KKDVRWKWTP TQTQAIENIK QCLVSPPVLR HFDFSKKILL ETDASDVAVG 720
  721 AVLSQKHDDD KYYPVGYYSA KMSKAQLNYS VSDKEMLAII KSLKHWRHYL ESTIEPFKIL 780
  781 TDHRNLIGRI TNESEPENKR LARWQLFLQD FNFEINYRPG SANHIADALS RIVDETEPIP 840
  841 KDSEDNSINF VNQISITDDF KNQVVTEYTN DTKLLNLLNN EDKRVEENIQ LKDGLLINSK 900
  901 DQILLPNDTQ LTRTIIKKYH EEGKLIHPGI ELLTNIILRR FTWKGIRKQI QEYVQNCHTC 960
  961 QINKSRNHKP YGPLQPIPPS ERPWESLSMD FITALPESSG YNALFVVVDR FSKMAILVPC1020
 1021 TKSITAEQTA RMFDQRVIAY FGNPKEIIAD NDHIFTSQTW KDFAHKYNFV MKFSLPYRPQ1080
 1081 TDGQTERTNQ TVEKLLRCVC STHPNTWVDH ISLVQQSYNN AIHSATQMTP FEIVHRYSPA1140
 1141 LSPLELPSFS DKTDENSQET IQVFQTVKEH LNTNNIKMKK YFDMKIQEIE EFQPGDLVMV1200
 1201 KRTKTGFLHK SNKLAPSFAG PFYVLQKSGP NNYELDLPDS IKHMFSSTFH VSHLEKYRHN1260
 1261 SELNYATIDE SDIGTILHIL EHKNREQVLY LNVKYISNLN PSTIMSGWTT LATALQADKA1320
 1321 IVNDYIKNNN LNI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..180] PSI-BLAST 21.045757 HIV capsid protein, dimerisation domain; HIV-1 capsid protein
    2 View Details [181..238] deduced N/A No confident structure predictions are available.
    3 View Details [239..393] PSI-BLAST 24.154902 CRYSTAL STRUCTURE OF A TETHERED DIMER OF HIV-1 PROTEASE COMPLEXED WITH AN INHIBITOR
    4 View Details [394..920] PSI-BLAST 165.0 HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase
    5 View Details [921..1220] PSI-BLAST 71.0 N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain
    6 View Details [1221..1333] FFAS03 1.31 Polycomb chromodomain complexed with the histone H3 tail containing trimethyllysine 27.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.28448955239851 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.786413651497179 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.548058390008807 bayes_pls_golite062009
  • DNA binding
    		•  0.541861348095563 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • hydrolase activity
    		•  0.934096653248474 bayes_pls_golite062009
  • catalytic activity
    		•  0.778715931979077 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.478344177019014 bayes_pls_golite062009
  • peptidase activity
    		•  0.476168407632189 bayes_pls_golite062009
  • aspartic-type endopeptidase activity
    		•  0.403642706513097 bayes_pls_golite062009
  • aspartic-type peptidase activity
    		•  0.403642706513097 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.229854266530628 bayes_pls_golite062009
  • binding
    		•  0.151374799700247 bayes_pls_golite062009
    4
    Term Confidence Notes
  • nucleotidyltransferase activity
    		•  1.11992657762408 bayes_pls_golite062009
  • DNA polymerase activity
    		•  0.97735803396704 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  0.966025256970563 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.870949824174184 bayes_pls_golite062009
  • binding
    		•  0.452590422306309 bayes_pls_golite062009
  • catalytic activity
    		•  0.282562363863898 bayes_pls_golite062009
  • transferase activity
    		•  0.280309374132814 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.164715045017202 bayes_pls_golite062009
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle